Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00231
         (756 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g61990.1 68418.m07780 pentatricopeptide (PPR) repeat-containi...    29   4.4  
At5g06760.1 68418.m00764 late embryogenesis abundant group 1 dom...    28   7.7  

>At5g61990.1 68418.m07780 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 974

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +3

Query: 585 DSEDRKKEIDPKFDRAKLAGLEP-NTKYRIEIRAKTKAG 698
           D   R+ E+ P FD A  AG+EP +  Y + I A  K G
Sbjct: 851 DKMGRRAEMFPVFDEAIAAGIEPDHIMYSVIINAFLKEG 889


>At5g06760.1 68418.m00764 late embryogenesis abundant group 1
           domain-containing protein / LEA group 1
           domain-containing protein low similarity to SP|P46515 11
           kDa late embryogenesis abundant protein (DS11)
           {Helianthus annuus}; contains Pfam profile PF03760: Late
           embryogenesis abundant (LEA) group 1
          Length = 158

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = -1

Query: 228 RRHGSPAEHGAGAGRHLGQAEVARSLSGSVLSGPADH 118
           R+H +  +  AGAG  LG      S +G V  G   H
Sbjct: 63  RQHNAAMKEAAGAGTGLGLGTATHSTTGQVGHGTGTH 99


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.312    0.128    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,883,925
Number of Sequences: 28952
Number of extensions: 222202
Number of successful extensions: 593
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 592
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1682736544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)