Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00230
         (815 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr 1|||Ma...    27   3.2  
SPAC3A12.12 |atp11||F1-ATPase chaperone Atp11 |Schizosaccharomyc...    27   3.2  
SPAC14C4.08 |mug5||meiotically upregulated gene Mug5|Schizosacch...    25   9.7  

>SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 387

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +3

Query: 117 WDKFVDLRLKFTFKRSI 167
           WD F+D R++F F +SI
Sbjct: 305 WDVFIDWRIRFPFHKSI 321


>SPAC3A12.12 |atp11||F1-ATPase chaperone Atp11 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 286

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -1

Query: 371 IHHLQDDNYHSIYATSGYQIRISFATTNKFDL 276
           ++HL   ++ SI  TS Y +R +  T+N  DL
Sbjct: 9   VNHLLCHSFKSIPRTSAYAVRFAHHTSNNDDL 40


>SPAC14C4.08 |mug5||meiotically upregulated gene
           Mug5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 179

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 679 EHYST*ISNVRFKVLNDKIERAYEANLS 596
           EHY   +SN+ F  L++ ++R  E N S
Sbjct: 93  EHYEKSLSNINFFSLSNDLKRLEEYNTS 120


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,005,481
Number of Sequences: 5004
Number of extensions: 57419
Number of successful extensions: 94
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)