Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00230
         (815 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16495| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.5  
SB_23344| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_22050| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_55809| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  

>SB_16495| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 851

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 251 FLVPYEIKRDRICWWWQMKFVFGIQKL 331
           +L+PY    D ICWW   ++V    +L
Sbjct: 732 YLIPYPTDYDDICWWHSQRYVITAAEL 758


>SB_23344| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 458

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +2

Query: 251 FLVPYEIKRDRICWWWQMKFVFGIQKL 331
           +L+PY  + D ICWW   + +    +L
Sbjct: 342 YLLPYPTEYDHICWWHSQRHIIAAAEL 368


>SB_22050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 233

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = -2

Query: 553 LTYNKDLI*YYYDKGLYALMICDRVPYHHGKI-KRY 449
           ++Y  +L+ Y YD   Y     DRVPYH+ ++ KRY
Sbjct: 119 VSYRYELVPYRYDHVSYRY---DRVPYHYKRVFKRY 151


>SB_55809| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 149

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +1

Query: 460 SCHDDKELCHKSLKHKGLCHNN 525
           +CHDDK  CH    +K  CH N
Sbjct: 124 TCHDDKVTCH---DNKDTCHEN 142


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,452,836
Number of Sequences: 59808
Number of extensions: 386539
Number of successful extensions: 612
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 612
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2275631710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)