Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00230
         (815 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81458-3|CAB03823.2|  487|Caenorhabditis elegans Hypothetical pr...    29   5.3  
AF251126-1|AAF71273.1|  487|Caenorhabditis elegans UDP-GlcNAc:a-...    29   5.3  

>Z81458-3|CAB03823.2|  487|Caenorhabditis elegans Hypothetical
           protein C03E10.4 protein.
          Length = 487

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +2

Query: 290 WWWQMKFVF-GIQKLRILNDNYHLVNDE 370
           WWW+M FVF GI +   + D + L+ +E
Sbjct: 241 WWWKMNFVFDGIVEKYSMKDPWVLLLEE 268


>AF251126-1|AAF71273.1|  487|Caenorhabditis elegans
           UDP-GlcNAc:a-6-D-mannoside
           b1,2-N-acetylglucosaminyltransferase II protein.
          Length = 487

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +2

Query: 290 WWWQMKFVF-GIQKLRILNDNYHLVNDE 370
           WWW+M FVF GI +   + D + L+ +E
Sbjct: 241 WWWKMNFVFDGIVEKYSMKDPWVLLLEE 268


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,412,670
Number of Sequences: 27780
Number of extensions: 312470
Number of successful extensions: 466
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 459
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 466
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2008899418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)