Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00230
         (815 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   2.6  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    23   4.5  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   4.5  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    23   4.5  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    23   4.5  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   5.9  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    22   5.9  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   5.9  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -1

Query: 371 IHHLQDDNYHSIYATSGYQIRISFATTNKFD 279
           I HL+D ++HS    +   ++I F T +  D
Sbjct: 310 ITHLRDPDHHSTDIQNCDSVKIKFETLHTMD 340


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -3

Query: 336 IRNFWIPNTNFICHHQ 289
           I+N W+P+T F+   Q
Sbjct: 90  IKNIWVPDTFFVNEKQ 105


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -3

Query: 336 IRNFWIPNTNFICHHQ 289
           I+N W+P+T F+   Q
Sbjct: 90  IKNIWVPDTFFVNEKQ 105


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -3

Query: 336 IRNFWIPNTNFICHHQ 289
           I+N W+P+T F+   Q
Sbjct: 29  IKNIWVPDTFFVNEKQ 44


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 8/21 (38%), Positives = 10/21 (47%), Gaps = 1/21 (4%)
 Frame = +2

Query: 290 WWWQMKFV-FGIQKLRILNDN 349
           WWW MK       K  +L +N
Sbjct: 366 WWWNMKISNLSFDKQSLLKEN 386


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -1

Query: 368 HHLQDDNYHSIYATSGY 318
           HH+   N+H+I   SG+
Sbjct: 279 HHVHHANHHAILGHSGF 295


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = -2

Query: 526 YYYDKGLYALMICDRVPYHHGKIKRYL 446
           YY  + + A   C+R+    G++KR++
Sbjct: 235 YYMHQQIMARYNCERLCNRLGRVKRFI 261


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -1

Query: 410 PSEWHTRLIQQRI 372
           P +WHTR  ++R+
Sbjct: 613 PPQWHTRSTEKRV 625


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,346
Number of Sequences: 438
Number of extensions: 4193
Number of successful extensions: 15
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25974678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)