Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00229
         (755 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr 3|...    27   3.8  
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c...    26   6.7  
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy...    25   8.8  
SPBC4F6.09 |str1||siderophore-iron transporter Str1 |Schizosacch...    25   8.8  

>SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 512

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 9/23 (39%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = -1

Query: 80  GSTAHNH-YANDGDKYYFCKIHF 15
           G ++H + + ND  ++Y+CK HF
Sbjct: 200 GFSSHTYKFVNDKGEFYYCKWHF 222


>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1274

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 645 KLIEQWKNSLEF*RSRAGVGYTMTPSDLRKCYEK 746
           KL ++WKN  +  +    + Y   P DLRK  +K
Sbjct: 159 KLSKEWKNPSKKWKVGCKLAYEFFPKDLRKRLQK 192


>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1019

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = +1

Query: 112 WVREFAIRSSALVQQSTYSKRLKD*STVLNQRKTNKIR*SVVVEQSEM 255
           ++R F  RSS   + S   K ++D      +R+T +   + V+EQ ++
Sbjct: 605 FIRSFTFRSSNNSRMSQVFKDIQDMKKAATKRETERKEFADVIEQDKL 652


>SPBC4F6.09 |str1||siderophore-iron transporter Str1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 612

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -1

Query: 635 FMFIFLRYYCCDNYFY 588
           F+F ++ +YC DNY+Y
Sbjct: 376 FLF-YITFYCWDNYYY 390


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,872,793
Number of Sequences: 5004
Number of extensions: 54297
Number of successful extensions: 147
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)