Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00229
         (755 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0913 + 8882193-8883510,8887633-8887865,8889619-8889871,889...    29   3.0  
05_05_0387 + 24577448-24577638,24580375-24580767,24581078-245812...    28   9.2  

>12_01_0913 +
           8882193-8883510,8887633-8887865,8889619-8889871,
           8891281-8891470,8891641-8891773,8891797-8891886
          Length = 738

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -1

Query: 530 HNHILCMNVFLTLTYQHLVIPISTIAVR 447
           H+H+L + + L L + HLV+P +  A R
Sbjct: 8   HHHVLVLQLILLLPFLHLVVPGTPAAAR 35


>05_05_0387 +
           24577448-24577638,24580375-24580767,24581078-24581208,
           24581460-24581899
          Length = 384

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -1

Query: 146 SADDRIANSLTHTFKLFKKVPSGSTAHNHYANDG 45
           +++D +A+ L   FKL  K+ S  +A  H+ N+G
Sbjct: 279 TSEDEVADWLIERFKLKNKLLSDFSALGHFPNEG 312


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,899,186
Number of Sequences: 37544
Number of extensions: 296575
Number of successful extensions: 646
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 646
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)