Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00229
         (755 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22230| Best HMM Match : CARD (HMM E-Value=3.8e-17)                  31   1.0  
SB_42128| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.1  
SB_49270| Best HMM Match : RVT_1 (HMM E-Value=1.4)                     28   9.4  
SB_23058| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.4  
SB_847| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   9.4  
SB_12486| Best HMM Match : 7TMR-DISM_7TM (HMM E-Value=2.9)             28   9.4  
SB_6998| Best HMM Match : Ribonuclease_T2 (HMM E-Value=8)              28   9.4  

>SB_22230| Best HMM Match : CARD (HMM E-Value=3.8e-17)
          Length = 555

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 13/56 (23%), Positives = 33/56 (58%)
 Frame = +3

Query: 501 KDIHTKDVIVRPKSEIERQRTA*RQDKNTVEIVIATIVSQKYKHEYLQKLIEQWKN 668
           +++  ++ +   K+E+ R RT   + +  +  +   + S+K+KHE+ +K +E+ K+
Sbjct: 109 QEVEREEKLAEMKNELTRARTHSARLREEITSIGTHLDSEKHKHEHTKKELEELKS 164


>SB_42128| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 183

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 15/51 (29%), Positives = 28/51 (54%)
 Frame = +3

Query: 513 TKDVIVRPKSEIERQRTA*RQDKNTVEIVIATIVSQKYKHEYLQKLIEQWK 665
           +++ IVRP   ++R R A  +D+  V +  A   S +YK ++   + E W+
Sbjct: 4   SENEIVRP---LKRFRKAKSKDEEEVALAQAVPASTRYKKKWCVNMFENWR 51


>SB_49270| Best HMM Match : RVT_1 (HMM E-Value=1.4)
          Length = 594

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = +3

Query: 555 QRTA*RQDKNTVEIVIATIVSQKYKHEYLQKLIEQWKNSLEF*RSRA 695
           Q T  R+D NT E  +    +     +YLQ+LIE+ ++ L   R +A
Sbjct: 85  QATVTRKDNNTSETYVGLTENSFKTSDYLQRLIEKTEHFLRRMRWKA 131


>SB_23058| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 554

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
 Frame = -3

Query: 273 VLNSIAHLTLLYYDALSNFIR---LPLIQNCRLVL 178
           ++NSI H+ +LY     NF+R   +  IQN  LVL
Sbjct: 361 LINSIGHIPVLYIGLAGNFVRFLYISWIQNPWLVL 395


>SB_847| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1058

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = +3

Query: 555 QRTA*RQDKNTVEIVIATIVSQKYKHEYLQKLIEQWKNSLEF*RSRA 695
           Q T  R+D NT E  +    +     +YLQ+LIE+ ++ L   R +A
Sbjct: 186 QATVTRKDNNTSETYVGLTENSFKTSDYLQRLIEKTEHFLRRMRWKA 232


>SB_12486| Best HMM Match : 7TMR-DISM_7TM (HMM E-Value=2.9)
          Length = 492

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = +1

Query: 376 YSYYTIFLVVLYCFFLVILVLYRYLTAMVEIGITKCWYVSVKKTF 510
           Y Y   F +   CF L +  ++RY   +  +  T+C+ +S+   F
Sbjct: 109 YDYQVFFAMFTRCFLLCLPGVFRYDYPVFLVMFTRCFSLSLPGVF 153


>SB_6998| Best HMM Match : Ribonuclease_T2 (HMM E-Value=8)
          Length = 185

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 16/53 (30%), Positives = 29/53 (54%)
 Frame = +3

Query: 513 TKDVIVRPKSEIERQRTA*RQDKNTVEIVIATIVSQKYKHEYLQKLIEQWKNS 671
           ++D IVRP   +ER R A  +D+  V +  A   S +YK+++   + E  + +
Sbjct: 4   SEDEIVRP---LERFRKAKSKDEEEVALAQAVPASTRYKNKWCVNMFENCRTN 53


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,633,301
Number of Sequences: 59808
Number of extensions: 377985
Number of successful extensions: 966
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 900
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 966
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2058295707
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)