Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00229
         (755 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83128-6|CAB05638.2|  353|Caenorhabditis elegans Hypothetical pr...    29   3.6  
AL021176-1|CAA15975.2|  317|Caenorhabditis elegans Hypothetical ...    29   3.6  
AC006666-1|AAK21417.1|  339|Caenorhabditis elegans Cyclin b prot...    28   6.2  
AC006664-2|AAF39903.1|  346|Caenorhabditis elegans Hypothetical ...    28   8.2  

>Z83128-6|CAB05638.2|  353|Caenorhabditis elegans Hypothetical
           protein W01D2.4 protein.
          Length = 353

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 16/55 (29%), Positives = 24/55 (43%)
 Frame = -2

Query: 676 SRLFFHCSISF*RYSCLYFCDTIVAITISTVFLSWR*AVLCLSISLFGLTITSFV 512
           S   FH + +F      +F  T + I IS     W    +CL+  +F  TI + V
Sbjct: 248 SLCIFHATAAFIYEYMQFFAPTPLLIIISQFVWQWSSGAICLAYLVFNRTIRNLV 302


>AL021176-1|CAA15975.2|  317|Caenorhabditis elegans Hypothetical
           protein Y43E12A.1 protein.
          Length = 317

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 21/71 (29%), Positives = 37/71 (52%)
 Frame = +3

Query: 540 SEIERQRTA*RQDKNTVEIVIATIVSQKYKHEYLQKLIEQWKNSLEF*RSRAGVGYTMTP 719
           S I +Q  A +QD      ++A +  + ++H+ L  + E++++S +F R    V Y MT 
Sbjct: 239 SMIRKQLGASKQDIYDAIALLAQVAYKNFRHQKLCAIREKYQSS-KFGR----VSYLMTD 293

Query: 720 SDLRKCYEKGR 752
             L K +  GR
Sbjct: 294 EILEKIHRMGR 304


>AC006666-1|AAK21417.1|  339|Caenorhabditis elegans Cyclin b protein
           2.2 protein.
          Length = 339

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 21/71 (29%), Positives = 37/71 (52%)
 Frame = +3

Query: 540 SEIERQRTA*RQDKNTVEIVIATIVSQKYKHEYLQKLIEQWKNSLEF*RSRAGVGYTMTP 719
           S I +Q  A +QD      ++A +  + ++H+ L  + E++++S +F R    V Y MT 
Sbjct: 261 SMIRKQFGASKQDIYDAISLLAQVAYKNFRHQKLCAIREKYQSS-KFGR----VSYLMTD 315

Query: 720 SDLRKCYEKGR 752
             L K +  GR
Sbjct: 316 EILEKIHRMGR 326


>AC006664-2|AAF39903.1|  346|Caenorhabditis elegans Hypothetical
           protein H24O09.2 protein.
          Length = 346

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
 Frame = -2

Query: 340 TKAIKCTMQKFKMGHLTRYGMFSVK---LYRSSHSALLRRSI 224
           TKA++CT+Q + +  +  + +FS K   L +S H + L  S+
Sbjct: 8   TKALRCTLQHWPLLEILTFSLFSKKTKNLSKSLHRSALSISV 49


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,722,711
Number of Sequences: 27780
Number of extensions: 301365
Number of successful extensions: 1025
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 991
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1025
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)