Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00229
         (755 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g34315.1 68415.m04200 disease resistance protein-related simi...    31   0.83 
At3g27025.1 68416.m03381 expressed protein                             29   4.4  
At4g12870.1 68417.m02015 gamma interferon responsive lysosomal t...    28   7.7  

>At2g34315.1 68415.m04200 disease resistance protein-related similar
           to SP|P54120 AIG1 protein {Arabidopsis thaliana}
          Length = 246

 Score = 31.1 bits (67), Expect = 0.83
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +2

Query: 296 MTHFELLHCALYCFCTFDFMSFST 367
           + H  LL C  YCFC F F  F T
Sbjct: 221 LNHHLLLFCVFYCFCFFYFCIFPT 244


>At3g27025.1 68416.m03381 expressed protein 
          Length = 299

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -2

Query: 409 TKQPKKLYNNYRLIRRKTHEVKCTKAI 329
           +K+ K L  N +  RRK H V CT AI
Sbjct: 221 SKKKKDLKKNVQTCRRKVHPVLCTTAI 247


>At4g12870.1 68417.m02015 gamma interferon responsive lysosomal
           thiol reductase family protein / GILT family protein
           similar to SP|P13284 Gamma-interferon inducible
           lysosomal thiol reductase precursor {Homo sapiens};
           contains Pfam profile PF03227: Gamma interferon
           inducible lysosomal thiol reductase (GILT)
          Length = 229

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 393 FFGCFVLFFFSYTCLIPLSNRYGRNRYH 476
           FF CFVLF FS+  +   S++   N Y+
Sbjct: 12  FFACFVLFTFSHKLVTGESDKVELNLYY 39


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,351,283
Number of Sequences: 28952
Number of extensions: 263027
Number of successful extensions: 694
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 694
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1682736544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)