Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00228
(622 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q9V535 Cluster: RNA-binding protein 8A; n=11; Bilateria... 83 4e-15
UniRef50_Q9Y5S9 Cluster: RNA-binding protein 8A; n=41; Eukaryota... 78 2e-13
UniRef50_Q21832 Cluster: Putative uncharacterized protein rnp-4;... 61 2e-08
UniRef50_A0DJL0 Cluster: Chromosome undetermined scaffold_53, wh... 61 2e-08
UniRef50_Q54ME8 Cluster: Putative uncharacterized protein; n=1; ... 55 1e-06
UniRef50_Q4P5P9 Cluster: Putative uncharacterized protein; n=2; ... 52 1e-05
UniRef50_A3ANX1 Cluster: Putative uncharacterized protein; n=3; ... 50 4e-05
UniRef50_A5K1G5 Cluster: RNA binding protein, putative; n=1; Pla... 50 4e-05
UniRef50_A1CEY1 Cluster: RNA binding protein (Rbm8A), putative; ... 50 6e-05
UniRef50_Q8IM34 Cluster: RNA binding protein, putative; n=4; Pla... 49 8e-05
UniRef50_Q2U6F2 Cluster: RNA-binding protein RBM8/Tsunagi; n=9; ... 49 1e-04
UniRef50_Q22Z94 Cluster: RNA-binding motif protein 8; n=1; Tetra... 46 7e-04
UniRef50_O42847 Cluster: RNA-binding protein; n=1; Schizosacchar... 45 0.002
UniRef50_A3AZT3 Cluster: Putative uncharacterized protein; n=1; ... 42 0.016
UniRef50_Q6C7A0 Cluster: Similarities with tr|Q8LG23 Arabidopsis... 36 0.78
UniRef50_UPI0000DBF64F Cluster: UPI0000DBF64F related cluster; n... 34 3.1
UniRef50_A0VWK8 Cluster: Putative uncharacterized protein; n=1; ... 34 3.1
UniRef50_A7AMH0 Cluster: RNA recognition motif domain containing... 34 3.1
UniRef50_A4R0V9 Cluster: Predicted protein; n=1; Magnaporthe gri... 33 5.5
UniRef50_UPI0000D5766B Cluster: PREDICTED: similar to Collagen a... 33 7.3
UniRef50_Q9ZXF4 Cluster: ORF29; n=1; Bacillus phage phi105|Rep: ... 33 7.3
UniRef50_Q02388 Cluster: Collagen alpha-1(VII) chain precursor; ... 32 9.6
>UniRef50_Q9V535 Cluster: RNA-binding protein 8A; n=11;
Bilateria|Rep: RNA-binding protein 8A - Drosophila
melanogaster (Fruit fly)
Length = 165
Score = 83.4 bits (197), Expect = 4e-15
Identities = 53/123 (43%), Positives = 63/123 (51%), Gaps = 1/123 (0%)
Frame = +1
Query: 256 ADVLDIENSEEFEVDEDGEQXXXXXXXXXXXXXXXXXXNEAGGGSAAERGNRGRYDSLAP 435
ADVLDI+N+EEFEVDEDG+Q +++ A R R +
Sbjct: 2 ADVLDIDNAEEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNE---- 57
Query: 436 EGDSGTPGPQRSVEGWILLSVXXXXXXXXXXXXXIFRVW*D-KNIPLNLDRRTGFLKGYA 612
+ D PGPQRSVEGWIL F + + KNI LNLDRRTGF KGYA
Sbjct: 58 DDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYA 117
Query: 613 LVE 621
LVE
Sbjct: 118 LVE 120
>UniRef50_Q9Y5S9 Cluster: RNA-binding protein 8A; n=41;
Eukaryota|Rep: RNA-binding protein 8A - Homo sapiens
(Human)
Length = 174
Score = 77.8 bits (183), Expect = 2e-13
Identities = 53/129 (41%), Positives = 66/129 (51%), Gaps = 7/129 (5%)
Frame = +1
Query: 256 ADVLDIENS--EEFEVDEDGEQXXXXXXXXXXXXXXXXXXNEAGGGSAAERGNRGR---- 417
ADVLD+ + E+F +DEDG++ G G +E G+R R
Sbjct: 2 ADVLDLHEAGGEDFAMDEDGDESIHKLKEKAK--------KRKGRGFGSEEGSRARMRED 53
Query: 418 YDSLAPEGDSGTPGPQRSVEGWILLSVXXXXXXXXXXXXXIFRVW*D-KNIPLNLDRRTG 594
YDS+ +GD PGPQRSVEGWIL F + + KNI LNLDRRTG
Sbjct: 54 YDSVEQDGDE--PGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTG 111
Query: 595 FLKGYALVE 621
+LKGY LVE
Sbjct: 112 YLKGYTLVE 120
>UniRef50_Q21832 Cluster: Putative uncharacterized protein rnp-4;
n=2; Caenorhabditis|Rep: Putative uncharacterized
protein rnp-4 - Caenorhabditis elegans
Length = 142
Score = 60.9 bits (141), Expect = 2e-08
Identities = 38/83 (45%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Frame = +1
Query: 382 GGSAAERGNRGR--YDSLAPEGDSGTPGPQRSVEGWILLSVXXXXXXXXXXXXXIFRVW* 555
G A+ NR R YD + E + + PQRSVEGWI+ F +
Sbjct: 20 GRGLAQSRNRERITYDVVDEESSATSGAPQRSVEGWIVFVTNIHEEATEDDVHDKFSEYG 79
Query: 556 D-KNIPLNLDRRTGFLKGYALVE 621
KNI LNLDRRTGFLKGYALVE
Sbjct: 80 KIKNIHLNLDRRTGFLKGYALVE 102
>UniRef50_A0DJL0 Cluster: Chromosome undetermined scaffold_53, whole
genome shotgun sequence; n=4; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_53,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 441
Score = 60.9 bits (141), Expect = 2e-08
Identities = 34/75 (45%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Frame = +1
Query: 400 RGNRGRYDSLAPEGDSGTPGPQRSVEGWILLSVXXXXXXXXXXXXXIFRVW*D-KNIPLN 576
+G+ G + SL E D G PGP +S+EGWI++ F + KN+ LN
Sbjct: 297 KGDAGNFQSL--ESDDG-PGPMKSIEGWIVIVKGIHEEAQEDDVFDAFSKYGPIKNLHLN 353
Query: 577 LDRRTGFLKGYALVE 621
LDRRTGF+KGYALVE
Sbjct: 354 LDRRTGFVKGYALVE 368
>UniRef50_Q54ME8 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 187
Score = 55.2 bits (127), Expect = 1e-06
Identities = 30/74 (40%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Frame = +1
Query: 403 GNRGRYDSLAPEGDSGTPGPQRSVEGWILLSVXXXXXXXXXXXXXIFRVW*D-KNIPLNL 579
G G + SL +G P +S+EGWI+ IF + KNI LN+
Sbjct: 45 GKGGEFHSLNDDGGDKVGEPLKSIEGWIIFVRNIQEEVQEPDLMDIFAEYGQIKNIHLNI 104
Query: 580 DRRTGFLKGYALVE 621
DRRTGF KGYAL+E
Sbjct: 105 DRRTGFTKGYALIE 118
>UniRef50_Q4P5P9 Cluster: Putative uncharacterized protein; n=2;
Eukaryota|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 626
Score = 52.0 bits (119), Expect = 1e-05
Identities = 31/82 (37%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Frame = +1
Query: 379 GGGSAAERGNRGRYDSLAPEGDSGTPGPQRSVEGWILLSVXXXXXXXXXXXXXIFRVW*D 558
G G A+E GR+D+L DSG +SVEGW+++ F +
Sbjct: 39 GNGPASEGVKAGRFDTLDETADSGARAV-KSVEGWVIVVTNVHEEATEEDVTDKFLDYGM 97
Query: 559 -KNIPLNLDRRTGFLKGYALVE 621
++ LNLDRRTG++KGYAL+E
Sbjct: 98 VRSCHLNLDRRTGYVKGYALLE 119
>UniRef50_A3ANX1 Cluster: Putative uncharacterized protein; n=3;
Oryza sativa|Rep: Putative uncharacterized protein -
Oryza sativa subsp. japonica (Rice)
Length = 311
Score = 50.0 bits (114), Expect = 4e-05
Identities = 30/76 (39%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Frame = +1
Query: 379 GGGSAAERGNRGRYDSLAPEGDSGTPGPQRSVEGWILLSVXXXXXXXXXXXXXIFRVW*D 558
G ++ NR R+DSLA G+ G GP+RS+EGWILL F +
Sbjct: 57 GRSTSVLASNRDRFDSLADAGNPGH-GPKRSIEGWILLVSGVKEDAEEDDLYNTFSDFGH 115
Query: 559 -KNIPLNLDRRTGFLK 603
K++ LNL+RRTG+ K
Sbjct: 116 VKDLHLNLERRTGYAK 131
>UniRef50_A5K1G5 Cluster: RNA binding protein, putative; n=1;
Plasmodium vivax|Rep: RNA binding protein, putative -
Plasmodium vivax
Length = 119
Score = 50.0 bits (114), Expect = 4e-05
Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Frame = +1
Query: 460 PQRSVEGWILLSVXXXXXXXXXXXXXIFRVW*D-KNIPLNLDRRTGFLKGYALVE 621
P +S+EGWI++ +F + KN+ LNLDRRTGFLKGYA +E
Sbjct: 28 PAKSIEGWIIIITNIHGEARDDYIKDVFEKYGQIKNLHLNLDRRTGFLKGYAFLE 82
>UniRef50_A1CEY1 Cluster: RNA binding protein (Rbm8A), putative;
n=7; Pezizomycotina|Rep: RNA binding protein (Rbm8A),
putative - Aspergillus clavatus
Length = 159
Score = 49.6 bits (113), Expect = 6e-05
Identities = 23/53 (43%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Frame = +1
Query: 466 RSVEGWILLSVXXXXXXXXXXXXXIFRVW*D-KNIPLNLDRRTGFLKGYALVE 621
RS+EGWI+++ +F + + KN LNLDRRTG++KGYAL+E
Sbjct: 37 RSIEGWIIIATNIHEEASEEDVTDLFAEYGEIKNFSLNLDRRTGYVKGYALIE 89
>UniRef50_Q8IM34 Cluster: RNA binding protein, putative; n=4;
Plasmodium|Rep: RNA binding protein, putative -
Plasmodium falciparum (isolate 3D7)
Length = 107
Score = 49.2 bits (112), Expect = 8e-05
Identities = 25/55 (45%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Frame = +1
Query: 460 PQRSVEGWILLSVXXXXXXXXXXXXXIF-RVW*DKNIPLNLDRRTGFLKGYALVE 621
P +SVEGWI++ +F R KN+ LN+DRRTGFLKGYA +E
Sbjct: 16 PAKSVEGWIIIITNIHGEARDDYIKEVFERFGQIKNLHLNIDRRTGFLKGYAFLE 70
>UniRef50_Q2U6F2 Cluster: RNA-binding protein RBM8/Tsunagi; n=9;
Pezizomycotina|Rep: RNA-binding protein RBM8/Tsunagi -
Aspergillus oryzae
Length = 160
Score = 48.8 bits (111), Expect = 1e-04
Identities = 23/53 (43%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Frame = +1
Query: 466 RSVEGWILLSVXXXXXXXXXXXXXIFRVW*D-KNIPLNLDRRTGFLKGYALVE 621
RS+EGWI+++ +F + + KN LNLDRRTG++KGYAL+E
Sbjct: 38 RSIEGWIVIATNIHEESSEEDVTDLFAEYGEIKNFNLNLDRRTGYVKGYALIE 90
>UniRef50_Q22Z94 Cluster: RNA-binding motif protein 8; n=1;
Tetrahymena thermophila SB210|Rep: RNA-binding motif
protein 8 - Tetrahymena thermophila SB210
Length = 124
Score = 46.0 bits (104), Expect = 7e-04
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Frame = +1
Query: 400 RGNRGRYDSLAPEGDSGTPGPQRSVEGWILLSVXXXXXXXXXXXXXIFRVW*D-KNIPLN 576
+G G + SL + + G GP +SV+GW+L F + + KN LN
Sbjct: 13 QGESGVFTSL--DNNDGD-GPLKSVDGWLLFVTGLHEETTDDQIYDAFGEFGEIKNCHLN 69
Query: 577 LDRRTGFLKGYALVE 621
LDRR+G++KGYALV+
Sbjct: 70 LDRRSGYVKGYALVQ 84
>UniRef50_O42847 Cluster: RNA-binding protein; n=1;
Schizosaccharomyces pombe|Rep: RNA-binding protein -
Schizosaccharomyces pombe (Fission yeast)
Length = 121
Score = 44.8 bits (101), Expect = 0.002
Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Frame = +1
Query: 460 PQRSVEGWILLSVXXXXXXXXXXXXXIFRVW*D-KNIPLNLDRRTGFLKGYALVE 621
P +SVEG+I++ +F + KN+ LNLDRRTG++KGYAL+E
Sbjct: 3 PAKSVEGYIIIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALIE 57
>UniRef50_A3AZT3 Cluster: Putative uncharacterized protein; n=1;
Oryza sativa (japonica cultivar-group)|Rep: Putative
uncharacterized protein - Oryza sativa subsp. japonica
(Rice)
Length = 199
Score = 41.5 bits (93), Expect = 0.016
Identities = 17/21 (80%), Positives = 20/21 (95%)
Frame = +1
Query: 559 KNIPLNLDRRTGFLKGYALVE 621
KN+ LNLDRRTGF+KGYAL+E
Sbjct: 129 KNLHLNLDRRTGFVKGYALIE 149
>UniRef50_Q6C7A0 Cluster: Similarities with tr|Q8LG23 Arabidopsis
thaliana RNA-binding protein; n=1; Yarrowia
lipolytica|Rep: Similarities with tr|Q8LG23 Arabidopsis
thaliana RNA-binding protein - Yarrowia lipolytica
(Candida lipolytica)
Length = 113
Score = 35.9 bits (79), Expect = 0.78
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +1
Query: 457 GPQRSVEGWILLSVXXXXXXXXXXXXXIFRVW*DKNIP-LNLDRRTGFLKGYALVE 621
G + EGWI++ + + D + +NLDRRTG+ KGYAL++
Sbjct: 2 GITETTEGWIIIVDNLHPEISEEDLTDFYSTYGDVQVAHVNLDRRTGYAKGYALLQ 57
>UniRef50_UPI0000DBF64F Cluster: UPI0000DBF64F related cluster; n=2;
Eutheria|Rep: UPI0000DBF64F UniRef100 entry - Rattus
norvegicus
Length = 870
Score = 33.9 bits (74), Expect = 3.1
Identities = 22/69 (31%), Positives = 27/69 (39%), Gaps = 1/69 (1%)
Frame = +1
Query: 277 NSEEFEVDEDGEQXXXXXXXXXXXXXXXXXXNEAGG-GSAAERGNRGRYDSLAPEGDSGT 453
+ EE EV EDG +AG GS +RG G GD GT
Sbjct: 443 SGEEGEVGEDGLDGLNGEQGDSGIPGRRGERGDAGSQGSPGKRGASGDRGPKGLRGDPGT 502
Query: 454 PGPQRSVEG 480
PG S++G
Sbjct: 503 PGRDNSIQG 511
>UniRef50_A0VWK8 Cluster: Putative uncharacterized protein; n=1;
Dinoroseobacter shibae DFL 12|Rep: Putative
uncharacterized protein - Dinoroseobacter shibae DFL 12
Length = 527
Score = 33.9 bits (74), Expect = 3.1
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +1
Query: 379 GGGSAAERGNRGRYDSLAPEGDSGTPGPQRSVEG 480
GGG A + G RGR+ + G G PGP G
Sbjct: 88 GGGQAGQGGLRGRFAGMGQPGQPGQPGPAGQAAG 121
>UniRef50_A7AMH0 Cluster: RNA recognition motif domain containing
protein; n=1; Babesia bovis|Rep: RNA recognition motif
domain containing protein - Babesia bovis
Length = 98
Score = 33.9 bits (74), Expect = 3.1
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +1
Query: 460 PQRSVEGWILLSVXXXXXXXXXXXXXIFRVW*D-KNIPLNLDRRTGFLKGYALVE 621
P +++ GW+++ F + +I LN+DRR+G+ KGYA +E
Sbjct: 7 PIKTIGGWVIIVTGVHPEAQEEDIRDAFEGFGQITSIHLNMDRRSGYAKGYAFIE 61
>UniRef50_A4R0V9 Cluster: Predicted protein; n=1; Magnaporthe
grisea|Rep: Predicted protein - Magnaporthe grisea (Rice
blast fungus) (Pyricularia grisea)
Length = 195
Score = 33.1 bits (72), Expect = 5.5
Identities = 17/42 (40%), Positives = 21/42 (50%)
Frame = +1
Query: 370 NEAGGGSAAERGNRGRYDSLAPEGDSGTPGPQRSVEGWILLS 495
N GGG AAE+ +G DS GDS P +E + LS
Sbjct: 135 NPGGGGDAAEKNIQGEGDSTNRSGDSPLASPSSPIEDELELS 176
>UniRef50_UPI0000D5766B Cluster: PREDICTED: similar to Collagen
alpha-2(XI) chain precursor; n=1; Tribolium
castaneum|Rep: PREDICTED: similar to Collagen
alpha-2(XI) chain precursor - Tribolium castaneum
Length = 761
Score = 32.7 bits (71), Expect = 7.3
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +1
Query: 385 GSAAERGNRGRYDSLAPEGDSGTPGP 462
G RG RGR P+GD+G PGP
Sbjct: 684 GFRGSRGRRGRAGQQGPKGDTGQPGP 709
>UniRef50_Q9ZXF4 Cluster: ORF29; n=1; Bacillus phage phi105|Rep:
ORF29 - Bacteriophage phi-105
Length = 181
Score = 32.7 bits (71), Expect = 7.3
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +1
Query: 385 GSAAERGNRGRYDSLAPEGDSGTPGPQ 465
G E+GN+G P+G+ G PGPQ
Sbjct: 46 GEKGEKGNKGDTGKQGPQGEPGEPGPQ 72
>UniRef50_Q02388 Cluster: Collagen alpha-1(VII) chain precursor; n=30;
Eumetazoa|Rep: Collagen alpha-1(VII) chain precursor -
Homo sapiens (Human)
Length = 2944
Score = 32.3 bits (70), Expect = 9.6
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +1
Query: 385 GSAAERGNRGRYDSLAPEGDSGTPGP 462
GS E+G RG ++ P+GD G PGP
Sbjct: 1462 GSPGEQGPRGPPGAIGPKGDRGFPGP 1487
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 346,547,969
Number of Sequences: 1657284
Number of extensions: 5562614
Number of successful extensions: 21295
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 16306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21153
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 45221970467
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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