Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00228
         (622 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    22   3.6  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    22   3.6  
AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory recept...    22   3.6  
AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory recept...    22   3.6  
AM292333-1|CAL23145.2|  316|Tribolium castaneum gustatory recept...    22   4.8  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   6.3  

>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = +2

Query: 176 LDIYIFINYILFKLFTTSHNVYLL*NRLTC*ISKIQKNLKSTKMV 310
           L + +F+N +  K+ TTS  V L+     C +  +  ++  T +V
Sbjct: 251 LSLTVFLNLVAEKIPTTSDAVPLIGTYFNCIMFMVASSVVLTVVV 295


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = +2

Query: 176 LDIYIFINYILFKLFTTSHNVYLL*NRLTC*ISKIQKNLKSTKMV 310
           L + +F+N +  K+ TTS  V L+     C +  +  ++  T +V
Sbjct: 251 LSLTVFLNLVAEKIPTTSDAVPLIGTYFNCIMFMVASSVVLTVVV 295


>AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory receptor
           candidate 36 protein.
          Length = 355

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 194 INYILFKLFTTSHNVYLL*NRLTC 265
           I+YILF LF T   + L+   +TC
Sbjct: 258 ISYILFALFNTFGTILLI---MTC 278


>AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory receptor
           candidate 13 protein.
          Length = 390

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 9/57 (15%)
 Frame = -1

Query: 589 CVGPDS-EEYSYLTKLGKLX------LYI--FFLCFSCTLLTTGSSLQLISEVLVYR 446
           CV   + ++  +L KLG+L        Y+  F++     LLT G+ + L+ +  VY+
Sbjct: 72  CVSMSNLKKLKFLLKLGQLLGLAPVKFYVQKFYVVILAFLLTAGAIISLVYQAPVYK 128


>AM292333-1|CAL23145.2|  316|Tribolium castaneum gustatory receptor
           candidate 12 protein.
          Length = 316

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 8/50 (16%)
 Frame = -1

Query: 571 EEYSYLTKLGKLX------LYI--FFLCFSCTLLTTGSSLQLISEVLVYR 446
           ++  +L KLG+L        Y+  F++     LLT G+ + L+ +  VY+
Sbjct: 5   KKLKFLLKLGQLLGLAPVKFYVQKFYVVILAFLLTAGAIISLVYQAPVYK 54


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = -1

Query: 421  RIFRGYPVLQHCLHRLRCQNHDLFAYAPSP 332
            +I  G P+        + +NH L A AP P
Sbjct: 1635 KIVMGMPLYGQSFRLEKPENHGLNAKAPGP 1664


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,503
Number of Sequences: 336
Number of extensions: 1379
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15875032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)