Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00228
         (622 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    45   1e-05
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar...    29   0.54 

>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 121

 Score = 44.8 bits (101), Expect = 1e-05
 Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
 Frame = +1

Query: 460 PQRSVEGWILLSVXXXXXXXXXXXXXIFRVW*D-KNIPLNLDRRTGFLKGYALVE 621
           P +SVEG+I++               +F  +   KN+ LNLDRRTG++KGYAL+E
Sbjct: 3   PAKSVEGYIIIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALIE 57


>SPMIT.06 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 807

 Score = 29.1 bits (62), Expect = 0.54
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = -1

Query: 565 YSYLTKLGKLXLYIFFLCFSCTLLTTGSSLQLISEVLVYRYRLPELN 425
           YS++   G+   Y++F+   C L T    L L + + V +   P+L+
Sbjct: 641 YSFVHNRGRFATYVYFIIKDCVLRTLAHKLSLGTRMKVIKKFGPDLS 687


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,446,634
Number of Sequences: 5004
Number of extensions: 23187
Number of successful extensions: 75
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)