Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00228
         (622 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0290 + 2270749-2271037,2272227-2272363,2272660-2272805,227...    66   3e-11
03_06_0402 + 33681451-33681706,33682800-33682936,33683103-336831...    52   5e-07
11_06_0482 - 24095258-24095827,24095934-24095993                       29   2.3  
08_02_0292 - 15420378-15421229                                         28   6.9  
04_03_1009 + 21701102-21701968                                         27   9.1  
02_05_0100 - 25821606-25822349                                         27   9.1  

>05_01_0290 +
           2270749-2271037,2272227-2272363,2272660-2272805,
           2272853-2272877
          Length = 198

 Score = 65.7 bits (153), Expect = 3e-11
 Identities = 37/77 (48%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
 Frame = +1

Query: 394 AERGNRGRYDSLAPEGDSGTPGPQRSVEGWILLSVXXXXXXXXXXXXXIFRVW*D-KNIP 570
           A  G    +DSL   G  G PGP RS+EGWI+L               IFR +   KN+ 
Sbjct: 75  AGAGRASDFDSL---GSDGGPGPVRSIEGWIVLVTGVHEEAQEDDLHNIFRDFGQVKNLH 131

Query: 571 LNLDRRTGFLKGYALVE 621
           LNLDRRTGF+KGYAL+E
Sbjct: 132 LNLDRRTGFVKGYALIE 148


>03_06_0402 +
           33681451-33681706,33682800-33682936,33683103-33683153,
           33683798-33683866,33684286-33684428,33685464-33685521,
           33685823-33685938,33686298-33686391,33686950-33686961
          Length = 311

 Score = 51.6 bits (118), Expect = 5e-07
 Identities = 31/76 (40%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
 Frame = +1

Query: 379 GGGSAAERGNRGRYDSLAPEGDSGTPGPQRSVEGWILLSVXXXXXXXXXXXXXIFRVW*D 558
           G  ++    NR R+DSLA  G+ G  GPQRS+EGWILL                F  +  
Sbjct: 57  GRSTSVLASNRDRFDSLADAGNPGH-GPQRSIEGWILLVSGVKEDAEEDDLYNTFSDFGH 115

Query: 559 -KNIPLNLDRRTGFLK 603
            K++ LNL+RRTG+ K
Sbjct: 116 VKDLHLNLERRTGYAK 131


>11_06_0482 - 24095258-24095827,24095934-24095993
          Length = 209

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 376 AGGGSAAERGNRGRYDSLAPEGDSGTPGPQRSVE 477
           +GGG    RG++G+ +  +   DSGT     S E
Sbjct: 114 SGGGDGTARGHKGKKEVRSSNSDSGTAASSTSTE 147


>08_02_0292 - 15420378-15421229
          Length = 283

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = +1

Query: 376 AGGGSAAERGNRGRYDSLAPEGDSGTPGPQRSVEG 480
           AGGGS   R  R R    A EG +    P+RS  G
Sbjct: 204 AGGGSRRRRTERRRGREQAEEGRAAVAAPRRSRAG 238


>04_03_1009 + 21701102-21701968
          Length = 288

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +1

Query: 388 SAAERGNRGRYDSLAPEGDSGTPGPQRSVEGWILL 492
           +AA RG+ G    L P   +G  G +R+   W+LL
Sbjct: 221 AAALRGHIGCAPMLRPSSRAGAGGYRRTATSWVLL 255


>02_05_0100 - 25821606-25822349
          Length = 247

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +1

Query: 379 GGGSAAERGNRGRYDSLAPEGDSGTPGPQRSVE 477
           GGG    RG  GR+ S  P G SG   P+ + E
Sbjct: 147 GGGGGTFRGRGGRFPSRRP-GASGAAAPETAGE 178


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,113,450
Number of Sequences: 37544
Number of extensions: 150504
Number of successful extensions: 481
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 477
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)