Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00228
(622 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.) 55 4e-08
SB_29801| Best HMM Match : Collagen (HMM E-Value=3.2e-12) 31 0.75
SB_21796| Best HMM Match : COLFI (HMM E-Value=0) 31 0.75
SB_26644| Best HMM Match : Collagen (HMM E-Value=0) 28 5.3
SB_25350| Best HMM Match : Collagen (HMM E-Value=0) 28 7.0
SB_40963| Best HMM Match : Collagen (HMM E-Value=2.2e-09) 27 9.3
SB_22992| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.3
SB_43795| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.3
SB_21646| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.3
SB_17676| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.3
SB_14035| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.3
>SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 721
Score = 55.2 bits (127), Expect = 4e-08
Identities = 44/133 (33%), Positives = 62/133 (46%), Gaps = 6/133 (4%)
Frame = +1
Query: 241 STIKQADVLDIENSEEFE-VDEDGEQXXXXXXXXXXXXXXXXXXNEAGGGSAAERGNRGR 417
+T DVLD+E+ + E +D++GE G ++ R +
Sbjct: 216 NTTASMDVLDLEDDKPSEFLDDEGEDDVQRVKSGKKKKGRGF-----SGDKSSSRPDA-- 268
Query: 418 YDSLAPEGDSGTPGPQRS----VEGWILLSVXXXXXXXXXXXXXIFRVW*D-KNIPLNLD 582
YDS+ G+ G GP R VEGWIL +F + + KN+ +NLD
Sbjct: 269 YDSIEG-GEGGESGPARCEWHPVEGWILFVTNIHEEAQEDDIHELFSDYGEIKNLHVNLD 327
Query: 583 RRTGFLKGYALVE 621
RRTGF+KGYALVE
Sbjct: 328 RRTGFIKGYALVE 340
>SB_29801| Best HMM Match : Collagen (HMM E-Value=3.2e-12)
Length = 182
Score = 31.1 bits (67), Expect = 0.75
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = +1
Query: 385 GSAAERGNRGRYDSLAPEGDSGTPG 459
GS E+GNRGR P G G PG
Sbjct: 32 GSKGEKGNRGRRGRRGPRGPPGKPG 56
>SB_21796| Best HMM Match : COLFI (HMM E-Value=0)
Length = 1239
Score = 31.1 bits (67), Expect = 0.75
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1
Query: 385 GSAAERGNRGRYDSLAPEGDSGTPGP 462
G+ +RG RG S P+G++G PGP
Sbjct: 123 GAPGDRGERGSAGSDGPKGEAGGPGP 148
>SB_26644| Best HMM Match : Collagen (HMM E-Value=0)
Length = 877
Score = 28.3 bits (60), Expect = 5.3
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +1
Query: 385 GSAAERGNRGRYDSLAPEGDSGTPGP 462
G A G G + PEG++G PGP
Sbjct: 811 GEAGANGVSGPKGEMGPEGEAGQPGP 836
>SB_25350| Best HMM Match : Collagen (HMM E-Value=0)
Length = 1112
Score = 27.9 bits (59), Expect = 7.0
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +1
Query: 385 GSAAERGNRGRYDSLAPEGDSGTPGP 462
G+A E G RG P+G GT GP
Sbjct: 426 GNAGEPGERGPVGPQGPQGAPGTQGP 451
>SB_40963| Best HMM Match : Collagen (HMM E-Value=2.2e-09)
Length = 234
Score = 27.5 bits (58), Expect = 9.3
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = +1
Query: 379 GGGSAAERGNRGRYDSLAPEGDSGTPG 459
GGG E+G RG + P G G G
Sbjct: 29 GGGVKGEKGYRGELGKVGPSGPQGRKG 55
>SB_22992| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 101
Score = 27.5 bits (58), Expect = 9.3
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = +1
Query: 373 EAGGGSAAERGNRGRYDSL 429
EA GGS AERG G+Y L
Sbjct: 54 EAVGGSGAERGGEGQYAEL 72
>SB_43795| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 253
Score = 27.5 bits (58), Expect = 9.3
Identities = 20/48 (41%), Positives = 24/48 (50%)
Frame = -1
Query: 478 LQLISEVLVYRYRLPELNCRIFRGYPVLQHCLHRLRCQNHDLFAYAPS 335
LQ IS +++Y Y LN R FR PV H L Q HD F + S
Sbjct: 10 LQRISTLIIYNY----LN-RAFRQIPVDPADYHNLGFQIHDQFYFHTS 52
>SB_21646| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 178
Score = 27.5 bits (58), Expect = 9.3
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +1
Query: 385 GSAAERGNRGRYDSLAPEGDSGTPGPQ 465
G +G+ GR + P+GD G GPQ
Sbjct: 5 GVKGPQGDNGRDGPIGPKGDQGDIGPQ 31
>SB_17676| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1271
Score = 27.5 bits (58), Expect = 9.3
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +1
Query: 385 GSAAERGNRGRYDSLAPEGDSGTPG 459
GS +RG G + P+GD G PG
Sbjct: 1040 GSPGDRGQTGVPGPVGPDGDIGAPG 1064
>SB_14035| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 388
Score = 27.5 bits (58), Expect = 9.3
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +1
Query: 385 GSAAERGNRGRYDSLAPEGDSGTPGPQ 465
G+ RGN G P+GD+G GP+
Sbjct: 236 GTQGPRGNTGIMGPQGPKGDTGITGPK 262
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,590,839
Number of Sequences: 59808
Number of extensions: 174267
Number of successful extensions: 657
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 648
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1536271375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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