Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00228
(622 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CR541823-1|CAG46622.1| 174|Homo sapiens RBM8A protein. 78 3e-14
CR541805-1|CAG46604.1| 174|Homo sapiens RBM8A protein. 78 3e-14
BC071577-1|AAH71577.1| 174|Homo sapiens RNA binding motif prote... 78 3e-14
BC017088-1|AAH17088.1| 174|Homo sapiens RNA binding motif prote... 78 3e-14
AF403012-1|AAL26999.1| 174|Homo sapiens ribonucleoprotein RBM8 ... 78 3e-14
AF299118-1|AAG27091.1| 174|Homo sapiens RNA-binding protein Y14... 78 3e-14
AF127761-1|AAD21089.1| 174|Homo sapiens ribonucleoprotein RBM8 ... 78 3e-14
AF231511-1|AAG16781.1| 173|Homo sapiens RNA binding motif prote... 76 1e-13
AF198620-1|AAF37551.1| 173|Homo sapiens RNA binding motif prote... 76 1e-13
AF231512-1|AAG16782.1| 158|Homo sapiens RNA binding motif prote... 71 4e-12
AF182415-1|AAG14951.1| 158|Homo sapiens MDS014 protein. 71 4e-12
L23982-1|AAA58965.1| 2912|Homo sapiens collagen type VII protein. 32 1.4
L02870-1|AAA75438.1| 2944|Homo sapiens alpha-1 type VII collagen... 32 1.4
AB209645-1|BAD92882.1| 1027|Homo sapiens alpha 1 type VII collag... 32 1.4
L41162-1|AAC41947.1| 684|Homo sapiens alpha-3 type IX collagen ... 32 1.9
BC033174-1|AAH33174.1| 979|Homo sapiens Similar to collagen, ty... 32 1.9
BC011705-1|AAH11705.1| 684|Homo sapiens collagen, type IX, alph... 32 1.9
BC007574-1|AAH07574.1| 561|Homo sapiens Unknown (protein for IM... 32 1.9
AL035669-10|CAC12750.1| 684|Homo sapiens collagen type IX alpha... 32 1.9
AF026802-1|AAD47357.1| 684|Homo sapiens alpha-3 type IX collage... 32 1.9
AC112721-1|AAY24135.1| 2588|Homo sapiens unknown protein. 32 1.9
AB209636-1|BAD92873.1| 1702|Homo sapiens alpha 3 type VI collage... 32 1.9
BC074829-1|AAH74829.1| 455|Homo sapiens collagen-like tail subu... 31 2.5
BC074828-1|AAH74828.1| 455|Homo sapiens collagen-like tail subu... 31 2.5
AY150339-1|AAO06819.1| 456|Homo sapiens asymmetric acetylcholin... 31 2.5
AY150338-1|AAO06818.1| 456|Homo sapiens asymmetric acetylcholin... 31 2.5
AY150337-1|AAO06817.1| 456|Homo sapiens asymmetric acetylcholin... 31 2.5
AY150336-1|AAO06816.1| 456|Homo sapiens asymmetric acetylcholin... 31 2.5
AY150335-1|AAO06815.1| 210|Homo sapiens truncated asymmetric ac... 31 2.5
AY150334-1|AAO06814.1| 456|Homo sapiens asymmetric acetylcholin... 31 2.5
AJ225895-1|CAA12648.1| 456|Homo sapiens acetylcholinesterase-as... 31 2.5
AF229126-6|AAF43196.1| 445|Homo sapiens acetylcholinesterase co... 31 2.5
AF229126-5|AAF43197.1| 421|Homo sapiens acetylcholinesterase co... 31 2.5
AF229126-4|AAF43198.1| 451|Homo sapiens acetylcholinesterase co... 31 2.5
AF229126-3|AAF43199.1| 446|Homo sapiens acetylcholinesterase co... 31 2.5
AF229126-2|AAF43195.1| 455|Homo sapiens acetylcholinesterase co... 31 2.5
AF229126-1|AAF43202.1| 329|Homo sapiens acetylcholinesterase co... 31 2.5
AF229124-1|AAF43201.1| 281|Homo sapiens acetylcholinesterase co... 31 2.5
AF229122-1|AAF43200.1| 291|Homo sapiens acetylcholinesterase co... 31 2.5
AF057036-1|AAC39927.1| 455|Homo sapiens acetylcholinesterase co... 31 2.5
BC065509-1|AAH65509.1| 1019|Homo sapiens collagen, type VI, alph... 31 3.3
AY029208-1|AAA52056.2| 1019|Homo sapiens type VI collagen alpha ... 31 3.3
S75462-1|AAB20836.1| 345|Homo sapiens collagen type VI alpha 2(... 31 4.3
AM774227-1|CAO81740.1| 939|Homo sapiens collagen type VI alpha ... 31 4.3
X16711-1|CAA34683.1| 1160|Homo sapiens COL2A1 protein. 30 5.7
X16468-1|CAA34488.1| 1418|Homo sapiens protein ( Human mRNA for ... 30 5.7
X13783-1|CAA32030.1| 714|Homo sapiens alpha-1 type 2 collagen (... 30 5.7
L10347-1|AAC41772.1| 1487|Homo sapiens alpha-1 type II collagen ... 30 5.7
BC116449-1|AAI16450.1| 1487|Homo sapiens collagen, type II, alph... 30 5.7
X52022-1|CAA36267.1| 3176|Homo sapiens collagen type VI, alpha 3... 30 7.6
X06194-1|CAA29555.1| 61|Homo sapiens protein ( Human mRNA for ... 30 7.6
S75420-1|AAB20835.2| 306|Homo sapiens collagen type VI alpha 1(... 30 7.6
M27447-1|AAA52055.1| 60|Homo sapiens alpha-1 type VI collagen ... 30 7.6
BC052575-1|AAH52575.1| 1028|Homo sapiens collagen, type VI, alph... 30 7.6
AL713657-1|CAD28466.1| 417|Homo sapiens hypothetical protein pr... 30 7.6
>CR541823-1|CAG46622.1| 174|Homo sapiens RBM8A protein.
Length = 174
Score = 77.8 bits (183), Expect = 3e-14
Identities = 53/129 (41%), Positives = 66/129 (51%), Gaps = 7/129 (5%)
Frame = +1
Query: 256 ADVLDIENS--EEFEVDEDGEQXXXXXXXXXXXXXXXXXXNEAGGGSAAERGNRGR---- 417
ADVLD+ + E+F +DEDG++ G G +E G+R R
Sbjct: 2 ADVLDLHEAGGEDFAMDEDGDESIHKLKEKAK--------KRKGRGFGSEEGSRARMRED 53
Query: 418 YDSLAPEGDSGTPGPQRSVEGWILLSVXXXXXXXXXXXXXIFRVW*D-KNIPLNLDRRTG 594
YDS+ +GD PGPQRSVEGWIL F + + KNI LNLDRRTG
Sbjct: 54 YDSVEQDGDE--PGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTG 111
Query: 595 FLKGYALVE 621
+LKGY LVE
Sbjct: 112 YLKGYTLVE 120
>CR541805-1|CAG46604.1| 174|Homo sapiens RBM8A protein.
Length = 174
Score = 77.8 bits (183), Expect = 3e-14
Identities = 53/129 (41%), Positives = 66/129 (51%), Gaps = 7/129 (5%)
Frame = +1
Query: 256 ADVLDIENS--EEFEVDEDGEQXXXXXXXXXXXXXXXXXXNEAGGGSAAERGNRGR---- 417
ADVLD+ + E+F +DEDG++ G G +E G+R R
Sbjct: 2 ADVLDLHEAGGEDFAMDEDGDESIHKLKEKAK--------KRKGRGFGSEEGSRARMRED 53
Query: 418 YDSLAPEGDSGTPGPQRSVEGWILLSVXXXXXXXXXXXXXIFRVW*D-KNIPLNLDRRTG 594
YDS+ +GD PGPQRSVEGWIL F + + KNI LNLDRRTG
Sbjct: 54 YDSVEQDGDE--PGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTG 111
Query: 595 FLKGYALVE 621
+LKGY LVE
Sbjct: 112 YLKGYTLVE 120
>BC071577-1|AAH71577.1| 174|Homo sapiens RNA binding motif protein
8A protein.
Length = 174
Score = 77.8 bits (183), Expect = 3e-14
Identities = 53/129 (41%), Positives = 66/129 (51%), Gaps = 7/129 (5%)
Frame = +1
Query: 256 ADVLDIENS--EEFEVDEDGEQXXXXXXXXXXXXXXXXXXNEAGGGSAAERGNRGR---- 417
ADVLD+ + E+F +DEDG++ G G +E G+R R
Sbjct: 2 ADVLDLHEAGGEDFAMDEDGDESIHKLKEKAK--------KRKGRGFGSEEGSRARMRED 53
Query: 418 YDSLAPEGDSGTPGPQRSVEGWILLSVXXXXXXXXXXXXXIFRVW*D-KNIPLNLDRRTG 594
YDS+ +GD PGPQRSVEGWIL F + + KNI LNLDRRTG
Sbjct: 54 YDSVEQDGDE--PGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTG 111
Query: 595 FLKGYALVE 621
+LKGY LVE
Sbjct: 112 YLKGYTLVE 120
>BC017088-1|AAH17088.1| 174|Homo sapiens RNA binding motif protein
8A protein.
Length = 174
Score = 77.8 bits (183), Expect = 3e-14
Identities = 53/129 (41%), Positives = 66/129 (51%), Gaps = 7/129 (5%)
Frame = +1
Query: 256 ADVLDIENS--EEFEVDEDGEQXXXXXXXXXXXXXXXXXXNEAGGGSAAERGNRGR---- 417
ADVLD+ + E+F +DEDG++ G G +E G+R R
Sbjct: 2 ADVLDLHEAGGEDFAMDEDGDESIHKLKEKAK--------KRKGRGFGSEEGSRARMRED 53
Query: 418 YDSLAPEGDSGTPGPQRSVEGWILLSVXXXXXXXXXXXXXIFRVW*D-KNIPLNLDRRTG 594
YDS+ +GD PGPQRSVEGWIL F + + KNI LNLDRRTG
Sbjct: 54 YDSVEQDGDE--PGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTG 111
Query: 595 FLKGYALVE 621
+LKGY LVE
Sbjct: 112 YLKGYTLVE 120
>AF403012-1|AAL26999.1| 174|Homo sapiens ribonucleoprotein RBM8
protein.
Length = 174
Score = 77.8 bits (183), Expect = 3e-14
Identities = 53/129 (41%), Positives = 66/129 (51%), Gaps = 7/129 (5%)
Frame = +1
Query: 256 ADVLDIENS--EEFEVDEDGEQXXXXXXXXXXXXXXXXXXNEAGGGSAAERGNRGR---- 417
ADVLD+ + E+F +DEDG++ G G +E G+R R
Sbjct: 2 ADVLDLHEAGGEDFAMDEDGDESIHKLKEKAK--------KRKGRGFGSEEGSRARMRED 53
Query: 418 YDSLAPEGDSGTPGPQRSVEGWILLSVXXXXXXXXXXXXXIFRVW*D-KNIPLNLDRRTG 594
YDS+ +GD PGPQRSVEGWIL F + + KNI LNLDRRTG
Sbjct: 54 YDSVEQDGDE--PGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTG 111
Query: 595 FLKGYALVE 621
+LKGY LVE
Sbjct: 112 YLKGYTLVE 120
>AF299118-1|AAG27091.1| 174|Homo sapiens RNA-binding protein Y14
protein.
Length = 174
Score = 77.8 bits (183), Expect = 3e-14
Identities = 53/129 (41%), Positives = 66/129 (51%), Gaps = 7/129 (5%)
Frame = +1
Query: 256 ADVLDIENS--EEFEVDEDGEQXXXXXXXXXXXXXXXXXXNEAGGGSAAERGNRGR---- 417
ADVLD+ + E+F +DEDG++ G G +E G+R R
Sbjct: 2 ADVLDLHEAGGEDFAMDEDGDESIHKLKEKAK--------KRKGRGFGSEEGSRARMRED 53
Query: 418 YDSLAPEGDSGTPGPQRSVEGWILLSVXXXXXXXXXXXXXIFRVW*D-KNIPLNLDRRTG 594
YDS+ +GD PGPQRSVEGWIL F + + KNI LNLDRRTG
Sbjct: 54 YDSVEQDGDE--PGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTG 111
Query: 595 FLKGYALVE 621
+LKGY LVE
Sbjct: 112 YLKGYTLVE 120
>AF127761-1|AAD21089.1| 174|Homo sapiens ribonucleoprotein RBM8
protein.
Length = 174
Score = 77.8 bits (183), Expect = 3e-14
Identities = 53/129 (41%), Positives = 66/129 (51%), Gaps = 7/129 (5%)
Frame = +1
Query: 256 ADVLDIENS--EEFEVDEDGEQXXXXXXXXXXXXXXXXXXNEAGGGSAAERGNRGR---- 417
ADVLD+ + E+F +DEDG++ G G +E G+R R
Sbjct: 2 ADVLDLHEAGGEDFAMDEDGDESIHKLKEKAK--------KRKGRGFGSEEGSRARMRED 53
Query: 418 YDSLAPEGDSGTPGPQRSVEGWILLSVXXXXXXXXXXXXXIFRVW*D-KNIPLNLDRRTG 594
YDS+ +GD PGPQRSVEGWIL F + + KNI LNLDRRTG
Sbjct: 54 YDSVEQDGDE--PGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTG 111
Query: 595 FLKGYALVE 621
+LKGY LVE
Sbjct: 112 YLKGYTLVE 120
>AF231511-1|AAG16781.1| 173|Homo sapiens RNA binding motif protein
8A protein.
Length = 173
Score = 75.8 bits (178), Expect = 1e-13
Identities = 52/125 (41%), Positives = 64/125 (51%), Gaps = 3/125 (2%)
Frame = +1
Query: 256 ADVLDIENS--EEFEVDEDGEQXXXXXXXXXXXXXXXXXXNEAGGGSAAERGNRGRYDSL 429
ADVLD+ + E+F +DEDG++ +E GS A R YDS+
Sbjct: 2 ADVLDLHEAGGEDFAMDEDGDESIHKLKEKAKKRKGRGFGSE---GSRARM--REDYDSV 56
Query: 430 APEGDSGTPGPQRSVEGWILLSVXXXXXXXXXXXXXIFRVW*D-KNIPLNLDRRTGFLKG 606
+GD PGPQRSVEGWIL F + + KNI LNLDRRTG+LKG
Sbjct: 57 EQDGDE--PGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKG 114
Query: 607 YALVE 621
Y LVE
Sbjct: 115 YTLVE 119
>AF198620-1|AAF37551.1| 173|Homo sapiens RNA binding motif protein
8 protein.
Length = 173
Score = 75.8 bits (178), Expect = 1e-13
Identities = 52/125 (41%), Positives = 64/125 (51%), Gaps = 3/125 (2%)
Frame = +1
Query: 256 ADVLDIENS--EEFEVDEDGEQXXXXXXXXXXXXXXXXXXNEAGGGSAAERGNRGRYDSL 429
ADVLD+ + E+F +DEDG++ +E GS A R YDS+
Sbjct: 2 ADVLDLHEAGGEDFAMDEDGDESIHKLKEKAKKRKGRGFGSE---GSRARM--REDYDSV 56
Query: 430 APEGDSGTPGPQRSVEGWILLSVXXXXXXXXXXXXXIFRVW*D-KNIPLNLDRRTGFLKG 606
+GD PGPQRSVEGWIL F + + KNI LNLDRRTG+LKG
Sbjct: 57 EQDGDE--PGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKG 114
Query: 607 YALVE 621
Y LVE
Sbjct: 115 YTLVE 119
>AF231512-1|AAG16782.1| 158|Homo sapiens RNA binding motif protein
8B protein.
Length = 158
Score = 70.5 bits (165), Expect = 4e-12
Identities = 42/86 (48%), Positives = 49/86 (56%), Gaps = 5/86 (5%)
Frame = +1
Query: 379 GGGSAAERGNRGR----YDSLAPEGDSGTPGPQRSVEGWILLSVXXXXXXXXXXXXXIFR 546
G G +E G+R R YDS+ +GD PGPQRSVEGWIL F
Sbjct: 21 GRGFGSEEGSRARMREDYDSVEQDGDE--PGPQRSVEGWILFVTGVHEEATEEDIHDKFA 78
Query: 547 VW*D-KNIPLNLDRRTGFLKGYALVE 621
+ + KNI LNLDRRTG+LKGY LVE
Sbjct: 79 EYGEIKNIHLNLDRRTGYLKGYTLVE 104
>AF182415-1|AAG14951.1| 158|Homo sapiens MDS014 protein.
Length = 158
Score = 70.5 bits (165), Expect = 4e-12
Identities = 42/86 (48%), Positives = 49/86 (56%), Gaps = 5/86 (5%)
Frame = +1
Query: 379 GGGSAAERGNRGR----YDSLAPEGDSGTPGPQRSVEGWILLSVXXXXXXXXXXXXXIFR 546
G G +E G+R R YDS+ +GD PGPQRSVEGWIL F
Sbjct: 21 GRGFGSEEGSRARMREDYDSVEQDGDE--PGPQRSVEGWILFVTGVHEEATEEDIHDKFA 78
Query: 547 VW*D-KNIPLNLDRRTGFLKGYALVE 621
+ + KNI LNLDRRTG+LKGY LVE
Sbjct: 79 EYGEIKNIHLNLDRRTGYLKGYTLVE 104
>L23982-1|AAA58965.1| 2912|Homo sapiens collagen type VII protein.
Length = 2912
Score = 32.3 bits (70), Expect = 1.4
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +1
Query: 385 GSAAERGNRGRYDSLAPEGDSGTPGP 462
GS E+G RG ++ P+GD G PGP
Sbjct: 1462 GSPGEQGPRGPPGAIGPKGDRGFPGP 1487
Score = 29.9 bits (64), Expect = 7.6
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = +1
Query: 379 GGGSAAERGNRGRYDSLAPEGDSGTPGP--QRSVEGW 483
G E G+RG+ P+GD G PG +R +EG+
Sbjct: 1714 GAREKGEPGDRGQEGPRGPKGDPGLPGAPGERGIEGF 1750
>L02870-1|AAA75438.1| 2944|Homo sapiens alpha-1 type VII collagen
protein.
Length = 2944
Score = 32.3 bits (70), Expect = 1.4
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +1
Query: 385 GSAAERGNRGRYDSLAPEGDSGTPGP 462
GS E+G RG ++ P+GD G PGP
Sbjct: 1462 GSPGEQGPRGPPGAIGPKGDRGFPGP 1487
Score = 29.9 bits (64), Expect = 7.6
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = +1
Query: 379 GGGSAAERGNRGRYDSLAPEGDSGTPGP--QRSVEGW 483
G E G+RG+ P+GD G PG +R +EG+
Sbjct: 1714 GAREKGEPGDRGQEGPRGPKGDPGLPGAPGERGIEGF 1750
>AB209645-1|BAD92882.1| 1027|Homo sapiens alpha 1 type VII collagen
precursor variant protein.
Length = 1027
Score = 32.3 bits (70), Expect = 1.4
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +1
Query: 385 GSAAERGNRGRYDSLAPEGDSGTPGP 462
GS E+G RG ++ P+GD G PGP
Sbjct: 101 GSPGEQGPRGPPGAIGPKGDRGFPGP 126
Score = 29.9 bits (64), Expect = 7.6
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = +1
Query: 379 GGGSAAERGNRGRYDSLAPEGDSGTPGP--QRSVEGW 483
G E G+RG+ P+GD G PG +R +EG+
Sbjct: 353 GAREKGEPGDRGQEGPRGPKGDPGLPGAPGERGIEGF 389
>L41162-1|AAC41947.1| 684|Homo sapiens alpha-3 type IX collagen
protein.
Length = 684
Score = 31.9 bits (69), Expect = 1.9
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +1
Query: 385 GSAAERGNRGRYDSLAPEGDSGTPGPQ 465
G A +RG RG P+GD G PGP+
Sbjct: 262 GKAGDRGERGPEGFRGPKGDLGRPGPK 288
Score = 29.9 bits (64), Expect = 7.6
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = +1
Query: 385 GSAAERGNRGRYDSLAPEGDSGTPG 459
GS E+G RGR L G SG PG
Sbjct: 343 GSKGEKGERGRAGELGEAGPSGEPG 367
>BC033174-1|AAH33174.1| 979|Homo sapiens Similar to collagen, type
VI, alpha 3 protein.
Length = 979
Score = 31.9 bits (69), Expect = 1.9
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 382 GGSAAERGNRGRYDSLAPEGDSGTPGPQRSV 474
GG+A G RGR L +G+ G PGP+ +
Sbjct: 56 GGAAGAPGERGRTGPLGRKGEPGEPGPKGGI 86
>BC011705-1|AAH11705.1| 684|Homo sapiens collagen, type IX, alpha 3
protein.
Length = 684
Score = 31.9 bits (69), Expect = 1.9
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +1
Query: 385 GSAAERGNRGRYDSLAPEGDSGTPGPQ 465
G A +RG RG P+GD G PGP+
Sbjct: 262 GKAGDRGERGPEGFRGPKGDLGRPGPK 288
Score = 29.9 bits (64), Expect = 7.6
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = +1
Query: 385 GSAAERGNRGRYDSLAPEGDSGTPG 459
GS E+G RGR L G SG PG
Sbjct: 343 GSKGEKGERGRAGELGEAGPSGEPG 367
>BC007574-1|AAH07574.1| 561|Homo sapiens Unknown (protein for
IMAGE:3139559) protein.
Length = 561
Score = 31.9 bits (69), Expect = 1.9
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +1
Query: 385 GSAAERGNRGRYDSLAPEGDSGTPGPQ 465
G A +RG RG P+GD G PGP+
Sbjct: 139 GKAGDRGERGPEGFRGPKGDLGRPGPK 165
Score = 29.9 bits (64), Expect = 7.6
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = +1
Query: 385 GSAAERGNRGRYDSLAPEGDSGTPG 459
GS E+G RGR L G SG PG
Sbjct: 220 GSKGEKGERGRAGELGEAGPSGEPG 244
>AL035669-10|CAC12750.1| 684|Homo sapiens collagen type IX alpha 3
protein.
Length = 684
Score = 31.9 bits (69), Expect = 1.9
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +1
Query: 385 GSAAERGNRGRYDSLAPEGDSGTPGPQ 465
G A +RG RG P+GD G PGP+
Sbjct: 262 GKAGDRGERGPEGFRGPKGDLGRPGPK 288
Score = 29.9 bits (64), Expect = 7.6
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = +1
Query: 385 GSAAERGNRGRYDSLAPEGDSGTPG 459
GS E+G RGR L G SG PG
Sbjct: 343 GSKGEKGERGRAGELGEAGPSGEPG 367
>AF026802-1|AAD47357.1| 684|Homo sapiens alpha-3 type IX collagen
protein.
Length = 684
Score = 31.9 bits (69), Expect = 1.9
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +1
Query: 385 GSAAERGNRGRYDSLAPEGDSGTPGPQ 465
G A +RG RG P+GD G PGP+
Sbjct: 262 GKAGDRGERGPEGFRGPKGDLGRPGPK 288
Score = 29.9 bits (64), Expect = 7.6
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = +1
Query: 385 GSAAERGNRGRYDSLAPEGDSGTPG 459
GS E+G RGR L G SG PG
Sbjct: 343 GSKGEKGERGRAGELGEAGPSGEPG 367
>AC112721-1|AAY24135.1| 2588|Homo sapiens unknown protein.
Length = 2588
Score = 31.9 bits (69), Expect = 1.9
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 382 GGSAAERGNRGRYDSLAPEGDSGTPGPQRSV 474
GG+A G RGR L +G+ G PGP+ +
Sbjct: 2254 GGAAGAPGERGRTGPLGRKGEPGEPGPKGGI 2284
>AB209636-1|BAD92873.1| 1702|Homo sapiens alpha 3 type VI collagen
isoform 5 precursor variant protein.
Length = 1702
Score = 31.9 bits (69), Expect = 1.9
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 382 GGSAAERGNRGRYDSLAPEGDSGTPGPQRSV 474
GG+A G RGR L +G+ G PGP+ +
Sbjct: 779 GGAAGAPGERGRTGPLGRKGEPGEPGPKGGI 809
>BC074829-1|AAH74829.1| 455|Homo sapiens collagen-like tail subunit
(single strand of homotrimer) of asymmetric acetylch
protein.
Length = 455
Score = 31.5 bits (68), Expect = 2.5
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +1
Query: 385 GSAAERGNRGRYDSLAPEGDSGTPG 459
GS E+G+RG L P+G+ G PG
Sbjct: 180 GSRGEKGSRGEKGDLGPKGEKGFPG 204
>BC074828-1|AAH74828.1| 455|Homo sapiens collagen-like tail subunit
(single strand of homotrimer) of asymmetric acetylch
protein.
Length = 455
Score = 31.5 bits (68), Expect = 2.5
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +1
Query: 385 GSAAERGNRGRYDSLAPEGDSGTPG 459
GS E+G+RG L P+G+ G PG
Sbjct: 180 GSRGEKGSRGEKGDLGPKGEKGFPG 204
>AY150339-1|AAO06819.1| 456|Homo sapiens asymmetric
acetylcholinesterase collagen-like subunit protein.
Length = 456
Score = 31.5 bits (68), Expect = 2.5
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +1
Query: 385 GSAAERGNRGRYDSLAPEGDSGTPG 459
GS E+G+RG L P+G+ G PG
Sbjct: 180 GSRGEKGSRGEKGDLGPKGEKGFPG 204
>AY150338-1|AAO06818.1| 456|Homo sapiens asymmetric
acetylcholinesterase collagen-like subunit protein.
Length = 456
Score = 31.5 bits (68), Expect = 2.5
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +1
Query: 385 GSAAERGNRGRYDSLAPEGDSGTPG 459
GS E+G+RG L P+G+ G PG
Sbjct: 180 GSRGEKGSRGEKGDLGPKGEKGFPG 204
>AY150337-1|AAO06817.1| 456|Homo sapiens asymmetric
acetylcholinesterase collagen-like subunit protein.
Length = 456
Score = 31.5 bits (68), Expect = 2.5
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +1
Query: 385 GSAAERGNRGRYDSLAPEGDSGTPG 459
GS E+G+RG L P+G+ G PG
Sbjct: 180 GSRGEKGSRGEKGDLGPKGEKGFPG 204
>AY150336-1|AAO06816.1| 456|Homo sapiens asymmetric
acetylcholinesterase collagen-like subunit protein.
Length = 456
Score = 31.5 bits (68), Expect = 2.5
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +1
Query: 385 GSAAERGNRGRYDSLAPEGDSGTPG 459
GS E+G+RG L P+G+ G PG
Sbjct: 180 GSRGEKGSRGEKGDLGPKGEKGFPG 204
>AY150335-1|AAO06815.1| 210|Homo sapiens truncated asymmetric
acetylcholinesterase collagen-like subunit protein.
Length = 210
Score = 31.5 bits (68), Expect = 2.5
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +1
Query: 385 GSAAERGNRGRYDSLAPEGDSGTPG 459
GS E+G+RG L P+G+ G PG
Sbjct: 180 GSRGEKGSRGEKGDLGPKGEKGFPG 204
>AY150334-1|AAO06814.1| 456|Homo sapiens asymmetric
acetylcholinesterase collagen-like subunit protein.
Length = 456
Score = 31.5 bits (68), Expect = 2.5
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +1
Query: 385 GSAAERGNRGRYDSLAPEGDSGTPG 459
GS E+G+RG L P+G+ G PG
Sbjct: 180 GSRGEKGSRGEKGDLGPKGEKGFPG 204
>AJ225895-1|CAA12648.1| 456|Homo sapiens
acetylcholinesterase-associated collagen protein.
Length = 456
Score = 31.5 bits (68), Expect = 2.5
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +1
Query: 385 GSAAERGNRGRYDSLAPEGDSGTPG 459
GS E+G+RG L P+G+ G PG
Sbjct: 180 GSRGEKGSRGEKGDLGPKGEKGFPG 204
>AF229126-6|AAF43196.1| 445|Homo sapiens acetylcholinesterase
collagen-like tail subunit isoform II protein.
Length = 445
Score = 31.5 bits (68), Expect = 2.5
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +1
Query: 385 GSAAERGNRGRYDSLAPEGDSGTPG 459
GS E+G+RG L P+G+ G PG
Sbjct: 170 GSRGEKGSRGEKGDLGPKGEKGFPG 194
>AF229126-5|AAF43197.1| 421|Homo sapiens acetylcholinesterase
collagen-like tail subunit isoform III protein.
Length = 421
Score = 31.5 bits (68), Expect = 2.5
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +1
Query: 385 GSAAERGNRGRYDSLAPEGDSGTPG 459
GS E+G+RG L P+G+ G PG
Sbjct: 146 GSRGEKGSRGEKGDLGPKGEKGFPG 170
>AF229126-4|AAF43198.1| 451|Homo sapiens acetylcholinesterase
collagen-like tail subunit isoform IV protein.
Length = 451
Score = 31.5 bits (68), Expect = 2.5
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +1
Query: 385 GSAAERGNRGRYDSLAPEGDSGTPG 459
GS E+G+RG L P+G+ G PG
Sbjct: 176 GSRGEKGSRGEKGDLGPKGEKGFPG 200
>AF229126-3|AAF43199.1| 446|Homo sapiens acetylcholinesterase
collagen-like tail subunit isoform V protein.
Length = 446
Score = 31.5 bits (68), Expect = 2.5
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +1
Query: 385 GSAAERGNRGRYDSLAPEGDSGTPG 459
GS E+G+RG L P+G+ G PG
Sbjct: 171 GSRGEKGSRGEKGDLGPKGEKGFPG 195
>AF229126-2|AAF43195.1| 455|Homo sapiens acetylcholinesterase
collagen-like tail subunit protein.
Length = 455
Score = 31.5 bits (68), Expect = 2.5
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +1
Query: 385 GSAAERGNRGRYDSLAPEGDSGTPG 459
GS E+G+RG L P+G+ G PG
Sbjct: 180 GSRGEKGSRGEKGDLGPKGEKGFPG 204
>AF229126-1|AAF43202.1| 329|Homo sapiens acetylcholinesterase
collagen-like tail subunit isoform VIII protein.
Length = 329
Score = 31.5 bits (68), Expect = 2.5
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +1
Query: 385 GSAAERGNRGRYDSLAPEGDSGTPG 459
GS E+G+RG L P+G+ G PG
Sbjct: 180 GSRGEKGSRGEKGDLGPKGEKGFPG 204
>AF229124-1|AAF43201.1| 281|Homo sapiens acetylcholinesterase
collagen-like tail subunit isoform VII protein.
Length = 281
Score = 31.5 bits (68), Expect = 2.5
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +1
Query: 385 GSAAERGNRGRYDSLAPEGDSGTPG 459
GS E+G+RG L P+G+ G PG
Sbjct: 180 GSRGEKGSRGEKGDLGPKGEKGFPG 204
>AF229122-1|AAF43200.1| 291|Homo sapiens acetylcholinesterase
collagen-like tail subunit isoform VI protein.
Length = 291
Score = 31.5 bits (68), Expect = 2.5
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +1
Query: 385 GSAAERGNRGRYDSLAPEGDSGTPG 459
GS E+G+RG L P+G+ G PG
Sbjct: 180 GSRGEKGSRGEKGDLGPKGEKGFPG 204
>AF057036-1|AAC39927.1| 455|Homo sapiens acetylcholinesterase
collagen-like tail subunit protein.
Length = 455
Score = 31.5 bits (68), Expect = 2.5
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +1
Query: 385 GSAAERGNRGRYDSLAPEGDSGTPG 459
GS E+G+RG L P+G+ G PG
Sbjct: 180 GSRGEKGSRGEKGDLGPKGEKGFPG 204
>BC065509-1|AAH65509.1| 1019|Homo sapiens collagen, type VI, alpha 2
protein.
Length = 1019
Score = 31.1 bits (67), Expect = 3.3
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +1
Query: 385 GSAAERGNRGRYDSLAPEGDSGTPGPQ 465
G ++G+RG P GDSG PGP+
Sbjct: 481 GEPGKQGSRGDPGDAGPRGDSGQPGPK 507
>AY029208-1|AAA52056.2| 1019|Homo sapiens type VI collagen alpha 2
chain precursor protein.
Length = 1019
Score = 31.1 bits (67), Expect = 3.3
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +1
Query: 385 GSAAERGNRGRYDSLAPEGDSGTPGPQ 465
G ++G+RG P GDSG PGP+
Sbjct: 481 GEPGKQGSRGDPGDAGPRGDSGQPGPK 507
>S75462-1|AAB20836.1| 345|Homo sapiens collagen type VI alpha 2(VI)
chain protein.
Length = 345
Score = 30.7 bits (66), Expect = 4.3
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +1
Query: 385 GSAAERGNRGRYDSLAPEGDSGTPGP 462
G ++G+RG P GDSG PGP
Sbjct: 236 GEPGKQGSRGDPGDAGPRGDSGQPGP 261
>AM774227-1|CAO81740.1| 939|Homo sapiens collagen type VI alpha 6
protein.
Length = 939
Score = 30.7 bits (66), Expect = 4.3
Identities = 20/69 (28%), Positives = 26/69 (37%), Gaps = 1/69 (1%)
Frame = +1
Query: 277 NSEEFEVDEDGEQXXXXXXXXXXXXXXXXXXNEAGG-GSAAERGNRGRYDSLAPEGDSGT 453
N +E EV E+G + G GS +RG G + GD G
Sbjct: 130 NGQEGEVGENGIDGLNGEQGDNGLPGRKGEKGDEGSQGSPGKRGTPGDRGAKGLRGDPGA 189
Query: 454 PGPQRSVEG 480
PG S+EG
Sbjct: 190 PGVDSSIEG 198
>X16711-1|CAA34683.1| 1160|Homo sapiens COL2A1 protein.
Length = 1160
Score = 30.3 bits (65), Expect = 5.7
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 385 GSAAERGNRGRYDSLAPEGDSGTPGPQ 465
G E G +G + P+G SG PGPQ
Sbjct: 780 GEQGEAGQKGDAGAPGPQGPSGAPGPQ 806
>X16468-1|CAA34488.1| 1418|Homo sapiens protein ( Human mRNA for
alpha-1 type II collagen. ).
Length = 1418
Score = 30.3 bits (65), Expect = 5.7
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 385 GSAAERGNRGRYDSLAPEGDSGTPGPQ 465
G E G +G + P+G SG PGPQ
Sbjct: 780 GEQGEAGQKGDAGAPGPQGPSGAPGPQ 806
>X13783-1|CAA32030.1| 714|Homo sapiens alpha-1 type 2 collagen (714
AA) protein.
Length = 714
Score = 30.3 bits (65), Expect = 5.7
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 385 GSAAERGNRGRYDSLAPEGDSGTPGPQ 465
G E G +G + P+G SG PGPQ
Sbjct: 349 GEQGEAGQKGDAGAPGPQGPSGAPGPQ 375
>L10347-1|AAC41772.1| 1487|Homo sapiens alpha-1 type II collagen
protein.
Length = 1487
Score = 30.3 bits (65), Expect = 5.7
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 385 GSAAERGNRGRYDSLAPEGDSGTPGPQ 465
G E G +G + P+G SG PGPQ
Sbjct: 849 GEQGEAGQKGDAGAPGPQGPSGAPGPQ 875
>BC116449-1|AAI16450.1| 1487|Homo sapiens collagen, type II, alpha 1
(primary osteoarthritis, spondyloepiphyseal dysplasi
protein.
Length = 1487
Score = 30.3 bits (65), Expect = 5.7
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 385 GSAAERGNRGRYDSLAPEGDSGTPGPQ 465
G E G +G + P+G SG PGPQ
Sbjct: 849 GEQGEAGQKGDAGAPGPQGPSGAPGPQ 875
>X52022-1|CAA36267.1| 3176|Homo sapiens collagen type VI, alpha 3
chain protein.
Length = 3176
Score = 29.9 bits (64), Expect = 7.6
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 382 GGSAAERGNRGRYDSLAPEGDSGTPGPQRSV 474
GG+ G RGR L +G+ G PGP+ +
Sbjct: 2254 GGARGAPGERGRTGPLGRKGEPGEPGPKGGI 2284
>X06194-1|CAA29555.1| 61|Homo sapiens protein ( Human mRNA for
collagen alpha 1 (VI) chain 5' region. ).
Length = 61
Score = 29.9 bits (64), Expect = 7.6
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = +1
Query: 385 GSAAERGNRGRYDSLAPEGDSGTPGPQ 465
G ERG RG + P GD G GPQ
Sbjct: 4 GGPGERGPRGTPGTRGPRGDPGEAGPQ 30
>S75420-1|AAB20835.2| 306|Homo sapiens collagen type VI alpha 1(VI)
chain protein.
Length = 306
Score = 29.9 bits (64), Expect = 7.6
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = +1
Query: 385 GSAAERGNRGRYDSLAPEGDSGTPGPQ 465
G ERG RG + P GD G GPQ
Sbjct: 139 GGPGERGPRGTPGTRGPRGDPGEAGPQ 165
>M27447-1|AAA52055.1| 60|Homo sapiens alpha-1 type VI collagen
protein.
Length = 60
Score = 29.9 bits (64), Expect = 7.6
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = +1
Query: 385 GSAAERGNRGRYDSLAPEGDSGTPGPQ 465
G ERG RG + P GD G GPQ
Sbjct: 4 GGPGERGPRGTPGTRGPRGDPGEAGPQ 30
>BC052575-1|AAH52575.1| 1028|Homo sapiens collagen, type VI, alpha 1
protein.
Length = 1028
Score = 29.9 bits (64), Expect = 7.6
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = +1
Query: 385 GSAAERGNRGRYDSLAPEGDSGTPGPQ 465
G ERG RG + P GD G GPQ
Sbjct: 425 GGPGERGPRGTPGTRGPRGDPGEAGPQ 451
>AL713657-1|CAD28466.1| 417|Homo sapiens hypothetical protein
protein.
Length = 417
Score = 29.9 bits (64), Expect = 7.6
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +1
Query: 385 GSAAERGNRGRYDSLAPEGDSGTPGP 462
GS +G+RG P+G SG PGP
Sbjct: 178 GSQGPKGSRGSPGKPGPQGSSGDPGP 203
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 48,517,377
Number of Sequences: 237096
Number of extensions: 859960
Number of successful extensions: 7766
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 2395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7599
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6691573490
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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