Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00228
(622 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical p... 61 7e-10
AC024859-14|AAY43989.1| 643|Caenorhabditis elegans Hypothetical... 30 1.5
Z81104-2|CAB70254.1| 233|Caenorhabditis elegans Hypothetical pr... 29 3.5
Z71178-2|CAA94875.1| 297|Caenorhabditis elegans Hypothetical pr... 29 3.5
U58755-13|AAB00702.1| 348|Caenorhabditis elegans Collagen prote... 29 3.5
AF077539-3|AAC26291.1| 310|Caenorhabditis elegans Hypothetical ... 28 4.7
AF022985-12|AAB69959.1| 319|Caenorhabditis elegans Collagen pro... 28 4.7
AF022985-10|AAB69961.1| 325|Caenorhabditis elegans Collagen pro... 28 4.7
Z71178-1|CAA94874.1| 297|Caenorhabditis elegans Hypothetical pr... 28 6.2
Z81052-6|CAB02874.1| 336|Caenorhabditis elegans Hypothetical pr... 24 9.4
>Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical
protein R07E5.14 protein.
Length = 142
Score = 60.9 bits (141), Expect = 7e-10
Identities = 38/83 (45%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Frame = +1
Query: 382 GGSAAERGNRGR--YDSLAPEGDSGTPGPQRSVEGWILLSVXXXXXXXXXXXXXIFRVW* 555
G A+ NR R YD + E + + PQRSVEGWI+ F +
Sbjct: 20 GRGLAQSRNRERITYDVVDEESSATSGAPQRSVEGWIVFVTNIHEEATEDDVHDKFSEYG 79
Query: 556 D-KNIPLNLDRRTGFLKGYALVE 621
KNI LNLDRRTGFLKGYALVE
Sbjct: 80 KIKNIHLNLDRRTGFLKGYALVE 102
>AC024859-14|AAY43989.1| 643|Caenorhabditis elegans Hypothetical
protein Y71H2AM.19 protein.
Length = 643
Score = 29.9 bits (64), Expect = 1.5
Identities = 23/79 (29%), Positives = 35/79 (44%)
Frame = -1
Query: 583 GPDSEEYSYLTKLGKLXLYIFFLCFSCTLLTTGSSLQLISEVLVYRYRLPELNCRIFRGY 404
GPD+ S + G+ Y L S T SLQ+ +E + YR P + ++ G
Sbjct: 232 GPDAVHRSVTSSGGRKKQYPSALVLSPT---RELSLQIFNESRKFAYRTPITSALLYGGR 288
Query: 403 PVLQHCLHRLRCQNHDLFA 347
+ +H+LR H L A
Sbjct: 289 ENYKDQIHKLRLGCHILIA 307
>Z81104-2|CAB70254.1| 233|Caenorhabditis elegans Hypothetical
protein M199.4 protein.
Length = 233
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = +1
Query: 397 ERGNRGRYDSLAPEGDSGTPGPQRSVEGW 483
ERG RGR P G G PGP + W
Sbjct: 30 ERGPRGREGREGPRGAQGAPGPNGTGFFW 58
>Z71178-2|CAA94875.1| 297|Caenorhabditis elegans Hypothetical
protein B0024.2 protein.
Length = 297
Score = 28.7 bits (61), Expect = 3.5
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 385 GSAAERGNRGRYDSLAPEGDSGTPG 459
G +GN GR AP+G++G PG
Sbjct: 173 GQPGRKGNNGRPGQPAPQGNAGHPG 197
>U58755-13|AAB00702.1| 348|Caenorhabditis elegans Collagen protein
113 protein.
Length = 348
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +1
Query: 385 GSAAERGNRGRYDSLAPEGDSGTPGPQRSVEGW 483
G G RG+ + P+GDSG PG Q+ G+
Sbjct: 209 GPNGRDGTRGQKGPIGPKGDSGPPG-QKGPSGY 240
>AF077539-3|AAC26291.1| 310|Caenorhabditis elegans Hypothetical
protein T25D3.2 protein.
Length = 310
Score = 28.3 bits (60), Expect = 4.7
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +1
Query: 433 PEGDSGTPGPQRSVEGWI 486
PEGD G G +R V+GWI
Sbjct: 96 PEGDDGLWGGERVVKGWI 113
>AF022985-12|AAB69959.1| 319|Caenorhabditis elegans Collagen
protein 143 protein.
Length = 319
Score = 28.3 bits (60), Expect = 4.7
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +1
Query: 370 NEAGGGSAAERGNRGRYDSLAPEGDSGTPG 459
N G+ A+ G RG P GD+G+PG
Sbjct: 153 NNGQPGAPAQSGGRGPPGPRGPAGDAGSPG 182
>AF022985-10|AAB69961.1| 325|Caenorhabditis elegans Collagen
protein 142 protein.
Length = 325
Score = 28.3 bits (60), Expect = 4.7
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +1
Query: 370 NEAGGGSAAERGNRGRYDSLAPEGDSGTPG 459
N G+ A+ G RG P GD+G+PG
Sbjct: 153 NNGQPGAPAQSGGRGPPGPRGPAGDAGSPG 182
>Z71178-1|CAA94874.1| 297|Caenorhabditis elegans Hypothetical
protein B0024.1 protein.
Length = 297
Score = 27.9 bits (59), Expect = 6.2
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +1
Query: 385 GSAAERGNRGRYDSLAPEGDSGTPG 459
G RGN GR P+G++G PG
Sbjct: 174 GQPGRRGNDGRPGQPGPQGNAGQPG 198
>Z81052-6|CAB02874.1| 336|Caenorhabditis elegans Hypothetical
protein D2023.7 protein.
Length = 336
Score = 23.8 bits (49), Expect(2) = 9.4
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = +1
Query: 433 PEGDSGTPGPQ 465
P GDSG PGP+
Sbjct: 228 PPGDSGPPGPE 238
Score = 21.8 bits (44), Expect(2) = 9.4
Identities = 12/29 (41%), Positives = 13/29 (44%), Gaps = 3/29 (10%)
Frame = +1
Query: 382 GGSAAERGNRGRYDSLAPEG---DSGTPG 459
GGS G GR + P G D G PG
Sbjct: 179 GGSPGTDGYPGRPGEMGPPGPPGDDGKPG 207
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,937,883
Number of Sequences: 27780
Number of extensions: 133340
Number of successful extensions: 1012
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1001
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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