Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00228
         (622 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   3.2  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    21   9.7  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    21   9.7  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    21   9.7  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   9.7  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    21   9.7  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -1

Query: 514 CFSCTLLTTGSSLQLIS 464
           C S TLLT  +SL ++S
Sbjct: 706 CLSVTLLTVATSLVIVS 722


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 11/45 (24%), Positives = 23/45 (51%)
 Frame = +2

Query: 176 LDIYIFINYILFKLFTTSHNVYLL*NRLTC*ISKIQKNLKSTKMV 310
           L + +F+N +   + TTS  V L+ +   C +  +  ++  T +V
Sbjct: 234 LSLTVFLNLVAESMPTTSDAVPLIGSYFNCIMFMVASSVVLTVLV 278


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 11/45 (24%), Positives = 23/45 (51%)
 Frame = +2

Query: 176 LDIYIFINYILFKLFTTSHNVYLL*NRLTC*ISKIQKNLKSTKMV 310
           L + +F+N +   + TTS  V L+ +   C +  +  ++  T +V
Sbjct: 234 LSLTVFLNLVAESMPTTSDAVPLIGSYFNCIMFMVASSVVLTVLV 278


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 11/45 (24%), Positives = 23/45 (51%)
 Frame = +2

Query: 176 LDIYIFINYILFKLFTTSHNVYLL*NRLTC*ISKIQKNLKSTKMV 310
           L + +F+N +   + TTS  V L+ +   C +  +  ++  T +V
Sbjct: 234 LSLTVFLNLVAESMPTTSDAVPLIGSYFNCIMFMVASSVVLTVLV 278


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 10/23 (43%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
 Frame = +1

Query: 382 GGSAAERGNRGR--YDSLAPEGD 444
           GGS    GNRGR  +++   +GD
Sbjct: 89  GGSRGRGGNRGRTGFNNKNKDGD 111


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 11/45 (24%), Positives = 23/45 (51%)
 Frame = +2

Query: 176 LDIYIFINYILFKLFTTSHNVYLL*NRLTC*ISKIQKNLKSTKMV 310
           L + +F+N +   + TTS  V L+ +   C +  +  ++  T +V
Sbjct: 302 LSLTVFLNLVAESMPTTSDAVPLIGSYFNCIMFMVASSVVLTVLV 346


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,246
Number of Sequences: 438
Number of extensions: 1662
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18460203
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)