Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00227
         (739 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6C759 Cluster: Similarity; n=1; Yarrowia lipolytica|Re...    38   0.19 
UniRef50_A7SIP6 Cluster: Predicted protein; n=1; Nematostella ve...    36   1.0  
UniRef50_Q3DBU5 Cluster: Site-specific recombinase, phage integr...    33   7.3  
UniRef50_A7ETN5 Cluster: Predicted protein; n=1; Sclerotinia scl...    33   9.7  

>UniRef50_Q6C759 Cluster: Similarity; n=1; Yarrowia lipolytica|Rep:
           Similarity - Yarrowia lipolytica (Candida lipolytica)
          Length = 788

 Score = 38.3 bits (85), Expect = 0.19
 Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
 Frame = +1

Query: 499 NSICLIGELDKSGFIASHKFGLKPLESKLCFYIFLTFIS-NTEPLTPIATRFDISISSTF 675
           NS+ L  ELDK+ F A +   L P   KL F + L ++S N + ++P  + +D +I S F
Sbjct: 611 NSVFLSDELDKARFSAFYDLTLIPEMQKLLFSLVLFYVSKNWDSVSPKLSGYDFAILSAF 670

Query: 676 RVI 684
             I
Sbjct: 671 TEI 673


>UniRef50_A7SIP6 Cluster: Predicted protein; n=1; Nematostella
           vectensis|Rep: Predicted protein - Nematostella
           vectensis
          Length = 322

 Score = 35.9 bits (79), Expect = 1.0
 Identities = 16/63 (25%), Positives = 35/63 (55%)
 Frame = +1

Query: 550 HKFGLKPLESKLCFYIFLTFISNTEPLTPIATRFDISISSTFRVIRKVASWILTKLNDAI 729
           + FG  P+       I + ++SN+E +  ++ RFD+++SS      +V++ ++    + I
Sbjct: 90  NSFGRAPIPLAKHVMIGVWYLSNSETIRSVSDRFDVTLSSLESYPYRVSNALIGVAQEYI 149

Query: 730 RWP 738
           +WP
Sbjct: 150 KWP 152


>UniRef50_Q3DBU5 Cluster: Site-specific recombinase, phage integrase
           family, putative; n=10; Streptococcus|Rep: Site-specific
           recombinase, phage integrase family, putative -
           Streptococcus agalactiae CJB111
          Length = 406

 Score = 33.1 bits (72), Expect = 7.3
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +2

Query: 512 LLVNWTNQDSLHHINLDLNHSSQSYVFTYF*HLSQILNP*H 634
           LL++W NQ  L    L ++ ++  YVFTY      + +P H
Sbjct: 285 LLISWKNQQKLELSKLGISQTNDQYVFTYIDTKGNLNSPLH 325


>UniRef50_A7ETN5 Cluster: Predicted protein; n=1; Sclerotinia
           sclerotiorum 1980|Rep: Predicted protein - Sclerotinia
           sclerotiorum 1980
          Length = 452

 Score = 32.7 bits (71), Expect = 9.7
 Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
 Frame = +3

Query: 396 QYFIRLRRRRVDDYMHIID--SWTDAEFKNRMRLSEKQHLS 512
           Q++++L +RRVDD+  II   + +D  FK+R     + HLS
Sbjct: 170 QHYVQLEKRRVDDWFEIIPYRARSDTPFKDRTMGYRRVHLS 210


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 621,492,736
Number of Sequences: 1657284
Number of extensions: 11228535
Number of successful extensions: 19537
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 19017
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19534
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 60088620670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)