Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00227
         (739 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual    26   4.9  
SPAC824.09c |||GTPase activating protein |Schizosaccharomyces po...    26   6.4  
SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomy...    26   6.4  

>SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -3

Query: 590 KHNFDSSGLSPNLCDAMNPDLSNSPIRQML 501
           K NF    LSP   D    D++N P+R+ L
Sbjct: 281 KSNFRQYKLSPFFLDTFTGDVTNCPLRKNL 310


>SPAC824.09c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 320

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 447 IDSWTDAEFKNRMRLSEKQHLSYW 518
           +DSWTD + +N  R   ++   YW
Sbjct: 71  LDSWTDEQTENMTRWGNERANLYW 94


>SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 385

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 20/82 (24%), Positives = 34/82 (41%)
 Frame = +1

Query: 487 DYQKNSICLIGELDKSGFIASHKFGLKPLESKLCFYIFLTFISNTEPLTPIATRFDISIS 666
           +Y  +SI +        FI S    +    S     I  + IS+T   TP++T +  +  
Sbjct: 89  EYSSSSIPITTVSSSDSFIPSSSQTISASSSTTDNVIVSSSISSTVSSTPVSTIYSGTSG 148

Query: 667 STFRVIRKVASWILTKLNDAIR 732
           +TF         I T++ D +R
Sbjct: 149 TTFVSSSTTYQVIPTQICDGVR 170


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,774,798
Number of Sequences: 5004
Number of extensions: 53427
Number of successful extensions: 112
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)