Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00227
         (739 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0576 - 5130589-5131995                                           32   0.41 
06_03_0015 + 15431648-15431796,15431878-15432061,15435370-154354...    30   2.2  
08_02_1049 + 23944526-23945473                                         29   5.1  

>05_01_0576 - 5130589-5131995
          Length = 468

 Score = 32.3 bits (70), Expect = 0.41
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +1

Query: 610 ISNTEPLTPIATRFDISISSTFRVIRKVASWILTKLNDAIRWP 738
           ++  +PL  ++ RF + IS+   +I +V + I   L   +RWP
Sbjct: 177 LATGDPLREVSRRFGLGISTCHSIILQVCAAITAVLTRVVRWP 219


>06_03_0015 +
           15431648-15431796,15431878-15432061,15435370-15435455,
           15436863-15436957,15437614-15437689,15438073-15438185,
           15439849-15439955,15440227-15440400,15440691-15440915
          Length = 402

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = +3

Query: 393 MQYFIRLRRRRVDDYMHIIDSWTDAEFKNRMRLSEKQHLSYW 518
           M Y+I  + +R   +  + D+WT++E +  + L +K  +S W
Sbjct: 209 MPYYIHFQDQRPLVFAALFDTWTNSEDRMPVILGDKDSISTW 250


>08_02_1049 + 23944526-23945473
          Length = 315

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +3

Query: 396 QYFIRLRRRRVDDYMHIIDSWTDAEFK-NRMRLSEKQHL 509
           Q  +RL RRR++    I   W + E + NRM L  ++HL
Sbjct: 254 QGIMRLERRRMEMQWEIDRGWKETEARHNRMLLDAQRHL 292


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,509,258
Number of Sequences: 37544
Number of extensions: 264268
Number of successful extensions: 381
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 381
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)