Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00227
         (739 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48722| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.2  
SB_53426| Best HMM Match : THAP (HMM E-Value=0.00058)                  29   5.2  
SB_25623| Best HMM Match : THAP (HMM E-Value=0.00058)                  29   5.2  
SB_17382| Best HMM Match : Gpi1 (HMM E-Value=2.6)                      29   5.2  

>SB_48722| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 198

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 18/64 (28%), Positives = 29/64 (45%)
 Frame = +1

Query: 547 SHKFGLKPLESKLCFYIFLTFISNTEPLTPIATRFDISISSTFRVIRKVASWILTKLNDA 726
           S +  L  L S   F I L  +    P    A RF++S++S  R+       + ++L+  
Sbjct: 116 SRRSDLTSLNSFQEFIIVLMKLRLNVPFQDFAYRFEVSLTSVSRIFTSWIHAMDSRLSCF 175

Query: 727 IRWP 738
           I WP
Sbjct: 176 IHWP 179


>SB_53426| Best HMM Match : THAP (HMM E-Value=0.00058)
          Length = 531

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 18/64 (28%), Positives = 29/64 (45%)
 Frame = +1

Query: 547 SHKFGLKPLESKLCFYIFLTFISNTEPLTPIATRFDISISSTFRVIRKVASWILTKLNDA 726
           S +  L  L S   F I L  +    P    A RF++S++S  R+       + ++L+  
Sbjct: 262 SRRSDLTSLNSFQEFIIVLMKLRLNVPFQDFAYRFEVSLTSVSRIFTSWIHAMDSRLSCF 321

Query: 727 IRWP 738
           I WP
Sbjct: 322 IHWP 325


>SB_25623| Best HMM Match : THAP (HMM E-Value=0.00058)
          Length = 538

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 18/64 (28%), Positives = 29/64 (45%)
 Frame = +1

Query: 547 SHKFGLKPLESKLCFYIFLTFISNTEPLTPIATRFDISISSTFRVIRKVASWILTKLNDA 726
           S +  L  L S   F I L  +    P    A RF++S++S  R+       + ++L+  
Sbjct: 269 SRRSDLTSLNSFQEFIIVLMKLRLNVPFQDFAYRFEVSLTSVSRIFTSWIHAMDSRLSCF 328

Query: 727 IRWP 738
           I WP
Sbjct: 329 IHWP 332


>SB_17382| Best HMM Match : Gpi1 (HMM E-Value=2.6)
          Length = 280

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 18/64 (28%), Positives = 29/64 (45%)
 Frame = +1

Query: 547 SHKFGLKPLESKLCFYIFLTFISNTEPLTPIATRFDISISSTFRVIRKVASWILTKLNDA 726
           S +  L  L S   F I L  +    P    A RF++S++S  R+       + ++L+  
Sbjct: 75  SRRSDLTSLNSFQEFIIVLMKLRLNVPFQDFAYRFEVSLTSVSRIFTSWIHAMDSRLSCF 134

Query: 727 IRWP 738
           I WP
Sbjct: 135 IHWP 138


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,102,294
Number of Sequences: 59808
Number of extensions: 345165
Number of successful extensions: 560
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 559
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)