Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00227
         (739 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g26920.1 68417.m03874 hypothetical protein                          30   1.8  
At2g33240.1 68415.m04072 myosin, putative similar to myosin (GI:...    29   4.3  

>At4g26920.1 68417.m03874 hypothetical protein
          Length = 461

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +1

Query: 646 RFDISISSTFRVIRKVASWILTKLNDAIRW 735
           RF    S    VI   ASW+LTKL + +RW
Sbjct: 114 RFVHEASRASEVIHVDASWLLTKLKNPMRW 143


>At2g33240.1 68415.m04072 myosin, putative similar to myosin
           (GI:433663) [Arabidopsis thaliana]; myosin my5A
           (SP:Q02440) {Gallus gallus}
          Length = 1770

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = +1

Query: 565 KPLESKLCFYIFLTF-ISNTEPLTPIATRFDISISSTFRVIRKVASWILTKLNDAI 729
           K LE+ LC  + +T   S T+PL P +        +   V  K+  W++TK+N++I
Sbjct: 382 KALENSLCNRVMVTRGESITKPLDPGSAALSRDALAKI-VYSKLFDWLVTKINNSI 436


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,605,040
Number of Sequences: 28952
Number of extensions: 247921
Number of successful extensions: 382
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 382
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1624036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)