Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00226
         (658 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    22   5.1  
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    22   5.1  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   5.1  
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     21   8.9  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    21   8.9  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           21   8.9  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        21   8.9  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           21   8.9  

>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +1

Query: 550 HKEDAMKWFQQKYD 591
           HKED   W Q  YD
Sbjct: 252 HKEDPNYWSQGSYD 265


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +1

Query: 550 HKEDAMKWFQQKYD 591
           HKED   W Q  YD
Sbjct: 259 HKEDPNYWSQGSYD 272


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = -2

Query: 234  ENTGCCPVSCSNTLAARVSLSPDSP 160
            ENT C P + S    +   + PD P
Sbjct: 2280 ENTECHPDASSTMAPSTTPMVPDKP 2304


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = -1

Query: 397 QNYPWRRSCHAA 362
           Q YPW R  H A
Sbjct: 209 QIYPWMRKVHVA 220


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = -1

Query: 397 QNYPWRRSCHAA 362
           Q YPW R  H A
Sbjct: 209 QIYPWMRKVHVA 220


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 5/10 (50%), Positives = 8/10 (80%)
 Frame = +3

Query: 459 WTGLLRRTWR 488
           WTG+ ++ WR
Sbjct: 195 WTGIFQKKWR 204


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +3

Query: 207 NSQDNSLYFPRLGIQCV 257
           NS    + F  LGIQCV
Sbjct: 150 NSDTMCVTFSNLGIQCV 166


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = -1

Query: 397 QNYPWRRSCHAA 362
           Q YPW R  H A
Sbjct: 209 QIYPWMRKVHVA 220


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,220
Number of Sequences: 336
Number of extensions: 3330
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16969115
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)