Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00226
(658 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC26A3.07c |rpl1101|rpl11-1, rpl11|60S ribosomal protein L11|S... 159 2e-40
SPBC17G9.10 |rpl1102|rpl11-2|60S ribosomal protein L11|Schizosac... 159 2e-40
SPBC19G7.14c |cog5||Golgi transport complex subunit Cog5 |Schizo... 28 1.4
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 27 2.4
SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr 1|||Ma... 27 3.1
SPCC1223.09 |||uricase |Schizosaccharomyces pombe|chr 3|||Manual 25 9.6
SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyce... 25 9.6
>SPAC26A3.07c |rpl1101|rpl11-1, rpl11|60S ribosomal protein
L11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 174
Score = 159 bits (387), Expect = 2e-40
Identities = 77/112 (68%), Positives = 89/112 (79%), Gaps = 1/112 (0%)
Frame = +1
Query: 259 FGIRRNEKIAVHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKY 438
FGIRRNEKIA H TVRG KAEEILERGLKV+EYEL++ NFSATGNFGFGIQEHIDLGIKY
Sbjct: 57 FGIRRNEKIACHVTVRGPKAEEILERGLKVKEYELKKRNFSATGNFGFGIQEHIDLGIKY 116
Query: 439 DPSIGIYGLDFYVVLGGQ-VST*HKKA*DRKSGISPPPHKEDAMKWFQQKYD 591
DPSIGIYG+DFYVV+ + +KA + G + + ED + WF+QKYD
Sbjct: 117 DPSIGIYGMDFYVVMDRPGMRVARRKAQRGRVGYTHKINAEDTINWFKQKYD 168
Score = 81.0 bits (191), Expect = 1e-16
Identities = 38/53 (71%), Positives = 45/53 (84%)
Frame = +2
Query: 98 DNSKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVR 256
+ ++N M+ L I KL LNI +GESGDRLTRAAKVLEQL+GQ PVFSKARYT+R
Sbjct: 3 EKAQNPMKELRISKLVLNISLGESGDRLTRAAKVLEQLSGQTPVFSKARYTIR 55
>SPBC17G9.10 |rpl1102|rpl11-2|60S ribosomal protein
L11|Schizosaccharomyces pombe|chr 2|||Manual
Length = 174
Score = 159 bits (387), Expect = 2e-40
Identities = 77/112 (68%), Positives = 89/112 (79%), Gaps = 1/112 (0%)
Frame = +1
Query: 259 FGIRRNEKIAVHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKY 438
FGIRRNEKIA H TVRG KAEEILERGLKV+EYEL++ NFSATGNFGFGIQEHIDLGIKY
Sbjct: 57 FGIRRNEKIACHVTVRGPKAEEILERGLKVKEYELKKRNFSATGNFGFGIQEHIDLGIKY 116
Query: 439 DPSIGIYGLDFYVVLGGQ-VST*HKKA*DRKSGISPPPHKEDAMKWFQQKYD 591
DPSIGIYG+DFYVV+ + +KA + G + + ED + WF+QKYD
Sbjct: 117 DPSIGIYGMDFYVVMDRPGMRVARRKAQRGRVGYTHKINAEDTINWFKQKYD 168
Score = 81.0 bits (191), Expect = 1e-16
Identities = 38/53 (71%), Positives = 45/53 (84%)
Frame = +2
Query: 98 DNSKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVR 256
+ ++N M+ L I KL LNI +GESGDRLTRAAKVLEQL+GQ PVFSKARYT+R
Sbjct: 3 EKAQNPMKELRISKLVLNISLGESGDRLTRAAKVLEQLSGQTPVFSKARYTIR 55
>SPBC19G7.14c |cog5||Golgi transport complex subunit Cog5
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 411
Score = 27.9 bits (59), Expect = 1.4
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +3
Query: 201 WSNSQDNSLYFPRLGIQCVFW 263
WS +D ++G QCVFW
Sbjct: 282 WSKFEDGWYQISKIGAQCVFW 302
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 27.1 bits (57), Expect = 2.4
Identities = 18/63 (28%), Positives = 28/63 (44%)
Frame = +2
Query: 329 LRGV*KSENMNCGVTTSPPRVILASVFKNTLTWVSSTIPQLEFMDWTFTSYLAARFQRST 508
LR K+ N + T +VI ++ + WV TIP E++D Y + ST
Sbjct: 2503 LRSYRKTSQRNLSMRTY--KVIPLALKTGVIEWVQDTIPLGEYLDSAHKVYHPKEWSLST 2560
Query: 509 RRR 517
R+
Sbjct: 2561 CRK 2563
>SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 387
Score = 26.6 bits (56), Expect = 3.1
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -3
Query: 251 LYT*PWKIQAVVL*VAPTPWRHESA 177
+Y W I A +L V P PWR+ S+
Sbjct: 127 IYPLLWVITAFILIVFPFPWRYRSS 151
>SPCC1223.09 |||uricase |Schizosaccharomyces pombe|chr 3|||Manual
Length = 296
Score = 25.0 bits (52), Expect = 9.6
Identities = 11/38 (28%), Positives = 23/38 (60%)
Frame = -2
Query: 291 DSNLFITTDTKRRTVYLALENTGCCPVSCSNTLAARVS 178
D+++ + TDT++ T+Y+ +N VS AA+++
Sbjct: 54 DNSIVVPTDTQKNTIYVFAKNN---DVSVPEVFAAKLA 88
>SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 818
Score = 25.0 bits (52), Expect = 9.6
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 9/64 (14%)
Frame = +2
Query: 5 TSLELFLKSCNHGACTTACVEER*KGEEGSEDNS---------KNVMRNLHIRKLCLNIC 157
T L L S N +C V ++ K +E S +N+ +LHI KL + +
Sbjct: 638 TDFNLHLDSINGASCIPLTVVQKWKHDESSSSMIAFVKPNPVWRNLGSSLHIEKLVIIVY 697
Query: 158 VGES 169
+GE+
Sbjct: 698 LGEN 701
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,550,525
Number of Sequences: 5004
Number of extensions: 53303
Number of successful extensions: 148
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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