Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00226
(658 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0409 - 20503480-20503678,20504522-20504717,20504805-205048... 149 1e-36
01_01_0745 + 5769150-5769152,5769268-5769375,5769812-5769854,576... 149 1e-36
02_02_0195 + 7676014-7676094,7676111-7676218,7676307-7676349,767... 97 8e-21
05_02_0095 + 6564703-6564705,6564848-6564955,6565153-6565195,656... 87 9e-18
02_02_0196 + 7685933-7685961,7686086-7686284 56 2e-08
11_04_0418 - 17443989-17444082,17445153-17445406,17445709-174457... 33 0.26
06_03_1403 + 29923503-29923821,29924269-29924405,29924495-299246... 32 0.46
12_01_0263 + 1925924-1926319,1926565-1927143 29 2.5
11_01_0265 + 2007195-2007590,2007836-2008414 29 2.5
08_02_0286 - 15326876-15328135 29 2.5
08_02_1116 + 24400212-24400401,24402258-24402576,24403297-244034... 28 5.7
02_01_0137 + 988442-988641,989088-989281,989369-989488,989594-98... 28 7.5
>06_03_0409 -
20503480-20503678,20504522-20504717,20504805-20504847,
20505632-20505739,20505848-20505850
Length = 182
Score = 149 bits (362), Expect = 1e-36
Identities = 77/116 (66%), Positives = 88/116 (75%), Gaps = 3/116 (2%)
Frame = +1
Query: 256 SFGIRRNEKIAVHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIK 435
SFGIRRNEKIA + TVRG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIK
Sbjct: 58 SFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSETGCFGFGIQEHIDLGIK 117
Query: 436 YDPSIGIYGLDFYVVL---GGQVST*HKKA*DRKSGISPPPHKEDAMKWFQQKYDG 594
YDPS GIYG+DFYVVL G +V+ ++ + GI KEDAMKWFQ KY+G
Sbjct: 118 YDPSTGIYGMDFYVVLERAGYRVA--RRRRCKSRVGIQHRVTKEDAMKWFQVKYEG 171
Score = 83.8 bits (198), Expect = 1e-16
Identities = 40/55 (72%), Positives = 45/55 (81%)
Frame = +2
Query: 92 SEDNSKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVR 256
SE N MR + ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVR
Sbjct: 3 SEKKQSNPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQSPVFSKARYTVR 57
>01_01_0745 +
5769150-5769152,5769268-5769375,5769812-5769854,
5769945-5770140,5770836-5771034
Length = 182
Score = 149 bits (362), Expect = 1e-36
Identities = 77/116 (66%), Positives = 88/116 (75%), Gaps = 3/116 (2%)
Frame = +1
Query: 256 SFGIRRNEKIAVHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIK 435
SFGIRRNEKIA + TVRG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIK
Sbjct: 58 SFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSETGCFGFGIQEHIDLGIK 117
Query: 436 YDPSIGIYGLDFYVVL---GGQVST*HKKA*DRKSGISPPPHKEDAMKWFQQKYDG 594
YDPS GIYG+DFYVVL G +V+ ++ + GI KEDAMKWFQ KY+G
Sbjct: 118 YDPSTGIYGMDFYVVLERAGYRVA--RRRRCKSRVGIQHRVTKEDAMKWFQVKYEG 171
Score = 83.4 bits (197), Expect = 1e-16
Identities = 40/55 (72%), Positives = 45/55 (81%)
Frame = +2
Query: 92 SEDNSKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVR 256
SE N MR + ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVR
Sbjct: 3 SEKKQANPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQSPVFSKARYTVR 57
>02_02_0195 +
7676014-7676094,7676111-7676218,7676307-7676349,
7676449-7676648
Length = 143
Score = 97.5 bits (232), Expect = 8e-21
Identities = 47/60 (78%), Positives = 51/60 (85%)
Frame = +1
Query: 256 SFGIRRNEKIAVHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIK 435
SFGIRRNEKIA + TVRG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIK
Sbjct: 84 SFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIK 143
Score = 83.4 bits (197), Expect = 1e-16
Identities = 40/55 (72%), Positives = 45/55 (81%)
Frame = +2
Query: 92 SEDNSKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVR 256
SE N MR + ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVR
Sbjct: 29 SEKKQSNPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVR 83
>05_02_0095 +
6564703-6564705,6564848-6564955,6565153-6565195,
6565303-6565409,6566310-6566395,6566396-6566594
Length = 181
Score = 87.4 bits (207), Expect = 9e-18
Identities = 63/160 (39%), Positives = 90/160 (56%), Gaps = 4/160 (2%)
Frame = +2
Query: 92 SEDNSKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRLLVSV 271
SE N MR + ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVR
Sbjct: 3 SEKKQSNPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQSPVFSKARYTVRSFGIR 62
Query: 272 VMKRLLS--IVQSEELKQ--KKSLRGV*KSENMNCGVTTSPPRVILASVFKNTLTWVSST 439
+++ V+ E+ Q + L+ + +N+ VT S R ++ + ST
Sbjct: 63 RNEKIACYVTVRGEKAMQLLESGLKIIRIVDNLIPSVTRS-TRAKRINLSNQCFRYDPST 121
Query: 440 IPQLEFMDWTFTSYLAARFQRSTRRRKTGKVGFPHRLTKK 559
+ MD+ + A ++ + RRR +VG HR+TK+
Sbjct: 122 --GIYGMDF-YVVLERAGYRVARRRRCKSRVGIQHRVTKE 158
Score = 86.2 bits (204), Expect = 2e-17
Identities = 56/118 (47%), Positives = 70/118 (59%), Gaps = 5/118 (4%)
Frame = +1
Query: 256 SFGIRRNEKIAVHCTVRGAKAEEILERGLKVREYELRRDNF--SATGNFGFGIQEHIDLG 429
SFGIRRNEKIA + TVRG KA ++LE GLK+ DN S T + +
Sbjct: 58 SFGIRRNEKIACYVTVRGEKAMQLLESGLKIIRIV---DNLIPSVTRSTRAKRINLSNQC 114
Query: 430 IKYDPSIGIYGLDFYVVL---GGQVST*HKKA*DRKSGISPPPHKEDAMKWFQQKYDG 594
+YDPS GIYG+DFYVVL G +V+ ++ + GI KEDAMKWFQ KY+G
Sbjct: 115 FRYDPSTGIYGMDFYVVLERAGYRVA--RRRRCKSRVGIQHRVTKEDAMKWFQVKYEG 170
>02_02_0196 + 7685933-7685961,7686086-7686284
Length = 75
Score = 56.0 bits (129), Expect = 2e-08
Identities = 30/56 (53%), Positives = 37/56 (66%), Gaps = 3/56 (5%)
Frame = +1
Query: 436 YDPSIGIYGLDFYVVL---GGQVST*HKKA*DRKSGISPPPHKEDAMKWFQQKYDG 594
YDPS GIYG+DFYVVL G +V+ ++ + GI KEDAMKWFQ KY+G
Sbjct: 11 YDPSTGIYGMDFYVVLERAGYRVA--RRRRCKSRVGIQHRVTKEDAMKWFQVKYEG 64
>11_04_0418 -
17443989-17444082,17445153-17445406,17445709-17445783,
17446156-17446377,17446789-17446941,17447031-17447167,
17447615-17447933
Length = 417
Score = 32.7 bits (71), Expect = 0.26
Identities = 15/23 (65%), Positives = 18/23 (78%)
Frame = +1
Query: 277 EKIAVHCTVRGAKAEEILERGLK 345
EKIA + TVRG KA ++LE GLK
Sbjct: 280 EKIACYVTVRGEKAMQLLESGLK 302
>06_03_1403 +
29923503-29923821,29924269-29924405,29924495-29924647,
29924690-29925280,29925523-29925597,29925901-29926169,
29927238-29927331
Length = 545
Score = 31.9 bits (69), Expect = 0.46
Identities = 15/23 (65%), Positives = 18/23 (78%)
Frame = +1
Query: 277 EKIAVHCTVRGAKAEEILERGLK 345
EKIA + TVRG KA ++LE GLK
Sbjct: 403 EKIACYVTVRGEKAMQLLEIGLK 425
>12_01_0263 + 1925924-1926319,1926565-1927143
Length = 324
Score = 29.5 bits (63), Expect = 2.5
Identities = 20/63 (31%), Positives = 32/63 (50%)
Frame = +1
Query: 220 TACIFQG*VYSASFGIRRNEKIAVHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFG 399
T+C+ + V S +F I E I HC + +KA++ L L+V+E ++ G G
Sbjct: 255 TSCLKEVHVISTAFRIENIEAIMTHCQSQESKAKDQL-LALQVKEQMHSCESKEIHGLLG 313
Query: 400 FGI 408
GI
Sbjct: 314 SGI 316
>11_01_0265 + 2007195-2007590,2007836-2008414
Length = 324
Score = 29.5 bits (63), Expect = 2.5
Identities = 20/63 (31%), Positives = 32/63 (50%)
Frame = +1
Query: 220 TACIFQG*VYSASFGIRRNEKIAVHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFG 399
T+C+ + V S +F I E I HC + +KA++ L L+V+E ++ G G
Sbjct: 255 TSCLKEVHVISTAFRIENIEAIMTHCQSQESKAKDQL-LALQVKEQMHSCESKEIHGLLG 313
Query: 400 FGI 408
GI
Sbjct: 314 SGI 316
>08_02_0286 - 15326876-15328135
Length = 419
Score = 29.5 bits (63), Expect = 2.5
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = +1
Query: 250 SASFGIRRNEKIAVHCTVR-GAKAEEILERGLKVREYELRR 369
+AS + R +++ V C V A A+E+L RG + + ELRR
Sbjct: 140 AASGVLLRGDRLVVECAVLLAADADEVLRRGPRPLDDELRR 180
>08_02_1116 +
24400212-24400401,24402258-24402576,24403297-24403480,
24403752-24403971,24404282-24404427,24404533-24404571,
24404990-24405061
Length = 389
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Frame = +3
Query: 450 WNLWTGLLRRTWR----PGFNVAQEGVRQEKWDFPTASQ 554
W+L TG+LR W+ PG V Q+G+ W +Q
Sbjct: 15 WHLNTGILRE-WQIVNSPGVGVPQDGIATNTWPIENLTQ 52
>02_01_0137 +
988442-988641,989088-989281,989369-989488,989594-989673,
990244-990510,990840-992458,992571-993327,993560-995506
Length = 1727
Score = 27.9 bits (59), Expect = 7.5
Identities = 16/67 (23%), Positives = 29/67 (43%)
Frame = -1
Query: 298 YNGQQSFHYDGYQKTHCIPSLGKYRLLSCELLQHLGGTSQPVTGFTNTDVQAKLSDMKIP 119
YN + ++ + C+ + L+CE+L H+ Q +N D K+ KI
Sbjct: 456 YNNNRIENHFDLRMWVCVSDNFNEKSLTCEMLDHVCKDRQEYGNISNFDALQKILLEKIR 515
Query: 118 HYIFRII 98
H F ++
Sbjct: 516 HKRFLLV 522
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,408,532
Number of Sequences: 37544
Number of extensions: 338599
Number of successful extensions: 905
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 875
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 896
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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