Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00226
         (658 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4003| Best HMM Match : Ribosomal_L5_C (HMM E-Value=0)              162   3e-40
SB_57821| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_10020| Best HMM Match : Extensin_2 (HMM E-Value=0.88)               30   1.9  
SB_56087| Best HMM Match : Extensin_2 (HMM E-Value=0.29)               29   4.4  
SB_57888| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_22707| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  
SB_42606| Best HMM Match : Ank (HMM E-Value=3.4e-08)                   28   7.7  
SB_1562| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.7  

>SB_4003| Best HMM Match : Ribosomal_L5_C (HMM E-Value=0)
          Length = 260

 Score =  162 bits (393), Expect = 3e-40
 Identities = 82/113 (72%), Positives = 90/113 (79%), Gaps = 3/113 (2%)
 Frame = +1

Query: 256 SFGIRRNEKIAVHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIK 435
           SFGIRRNEKI+VHCTVRG KAEEILE+GLKV+EYEL +  FSATGNFGFGIQEHIDLGIK
Sbjct: 51  SFGIRRNEKISVHCTVRGPKAEEILEKGLKVKEYELVKGCFSATGNFGFGIQEHIDLGIK 110

Query: 436 YDPSIGIYGLDFYVVLGGQVST*HKKA*DRKSGISPPPH---KEDAMKWFQQK 585
           YDPSIGIYG+DF+VVLG       K+    K G    PH   K+DAMKWFQQK
Sbjct: 111 YDPSIGIYGMDFFVVLGRPGFNISKR--KHKQGRVGFPHRLTKDDAMKWFQQK 161



 Score =   99 bits (238), Expect = 2e-21
 Identities = 70/159 (44%), Positives = 85/159 (53%), Gaps = 10/159 (6%)
 Frame = +2

Query: 110 NVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRLLVSVVMKRLL 289
           N M+ L IRKL LNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTV         R  
Sbjct: 2   NPMKELRIRKLVLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTV---------RSF 52

Query: 290 SIVQSEELKQKKSLRGV*KSENMNCGVTTSPPRVILA--SVFKNTLTWVSSTI------- 442
            I ++E++    ++RG    E +  G+      ++    S   N    +   I       
Sbjct: 53  GIRRNEKISVHCTVRGPKAEEILEKGLKVKEYELVKGCFSATGNFGFGIQEHIDLGIKYD 112

Query: 443 PQLEFMDWTFTSYLA-ARFQRSTRRRKTGKVGFPHRLTK 556
           P +      F   L    F  S R+ K G+VGFPHRLTK
Sbjct: 113 PSIGIYGMDFFVVLGRPGFNISKRKHKQGRVGFPHRLTK 151


>SB_57821| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 941

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +3

Query: 171 VTG*LVPPRCWSNSQDNSLYFP 236
           VT  LVPP  W+ SQD  +Y+P
Sbjct: 742 VTPPLVPPMPWTGSQDAGMYYP 763


>SB_10020| Best HMM Match : Extensin_2 (HMM E-Value=0.88)
          Length = 379

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/50 (30%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
 Frame = -3

Query: 404 PKPKLPVAEKL-SRRNSYSLTFKPLSRISSALAPRTVQWTAIFSLRRIPK 258
           P P++P +  L S + S S  +KP+SRI ++L+  ++Q   ++  + +P+
Sbjct: 149 PLPRIPTSPSLVSLQVSPSYPYKPVSRIPTSLSLVSLQAPPLYPYKPLPR 198


>SB_56087| Best HMM Match : Extensin_2 (HMM E-Value=0.29)
          Length = 403

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 15/50 (30%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
 Frame = -3

Query: 404 PKPKLPVAEKLSRRNSYSL-TFKPLSRISSALAPRTVQWTAIFSLRRIPK 258
           P P++P +  L    +  L T+KPL RIS++L+  ++Q +  +  + +P+
Sbjct: 303 PLPRIPTSLSLVSLQAPPLYTYKPLPRISTSLSLVSLQASPSYPYKPLPR 352


>SB_57888| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 565

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +3

Query: 522 QEKWDFPTASQRRCYEVVPTEI*WYH 599
           Q  W+ PT +Q   Y    T+  WYH
Sbjct: 233 QANWNHPTKTQANWYHPTKTQANWYH 258


>SB_22707| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1499

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 21/51 (41%), Positives = 26/51 (50%)
 Frame = +2

Query: 245 YTVRLLVSVVMKRLLSIVQSEELKQKKSLRGV*KSENMNCGVTTSPPRVIL 397
           +TV  LV  V+K LL        K K SLR     E++N GVTT  P  +L
Sbjct: 60  FTVNSLVVCVVKELLGSKHGHR-KVKLSLR----PEDVNAGVTTIVPGFVL 105


>SB_42606| Best HMM Match : Ank (HMM E-Value=3.4e-08)
          Length = 551

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +1

Query: 364 RRDNFSATGNFGFGIQEHIDLGIKYD 441
           ++ ++SATG+F   ++EHI  G + D
Sbjct: 306 KKSHYSATGSFDGSVEEHISEGAQED 331


>SB_1562| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 738

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +1

Query: 268 RRNEKIAVHCTVRGAKAEEILERGLKVREYELRRDNFSATGNF 396
           RR +        RGA A EI ++G+K +  E RR+     G +
Sbjct: 147 RREDTFPKEKEARGANANEISKQGVKEKARETRREIVRQEGKY 189


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,992,428
Number of Sequences: 59808
Number of extensions: 406793
Number of successful extensions: 1068
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 994
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1065
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)