Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00226
(658 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U15643-1|AAC46585.1| 184|Drosophila melanogaster ribosomal prot... 189 3e-48
BT022593-1|AAY55009.1| 163|Drosophila melanogaster IP06777p pro... 189 3e-48
AY094790-1|AAM11143.1| 184|Drosophila melanogaster LD17235p pro... 189 3e-48
AE013599-2887|AAF57560.1| 184|Drosophila melanogaster CG7726-PA... 189 3e-48
AY069775-1|AAL39920.1| 2171|Drosophila melanogaster SD01562p pro... 29 7.3
AE013599-2783|AAF57626.1| 2599|Drosophila melanogaster CG15099-P... 29 7.3
AF132190-1|AAD34778.1| 1398|Drosophila melanogaster unknown prot... 28 9.7
AE014297-3357|AAN13952.1| 1398|Drosophila melanogaster CG10254-P... 28 9.7
AE014297-3356|AAF56162.1| 1398|Drosophila melanogaster CG10254-P... 28 9.7
>U15643-1|AAC46585.1| 184|Drosophila melanogaster ribosomal protein
DL11 protein.
Length = 184
Score = 189 bits (460), Expect = 3e-48
Identities = 96/117 (82%), Positives = 100/117 (85%), Gaps = 4/117 (3%)
Frame = +1
Query: 256 SFGIRRNEKIAVHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIK 435
SFGIRRNEKIAVHCTVRGAKAEEILERGLKVREYELRR+NFS+TGNFGFGIQEHIDLGIK
Sbjct: 64 SFGIRRNEKIAVHCTVRGAKAEEILERGLKVREYELRRENFSSTGNFGFGIQEHIDLGIK 123
Query: 436 YDPSIGIYGLDFYVVLGGQ-VST*HKKA*DRKSGISPPPH---KEDAMKWFQQKYDG 594
YDPSIGIYGLDFYVVLG + H+K RKSG H KEDAMKWFQQKYDG
Sbjct: 124 YDPSIGIYGLDFYVVLGRPGYNVNHRK---RKSGTVGFQHRLTKEDAMKWFQQKYDG 177
Score = 96.7 bits (230), Expect = 2e-20
Identities = 69/165 (41%), Positives = 90/165 (54%), Gaps = 11/165 (6%)
Frame = +2
Query: 98 DNSKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRLLVSVVM 277
D ++ +LHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTV
Sbjct: 11 DPAQEPDEDLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTV-------- 62
Query: 278 KRLLSIVQSEELKQKKSLRGV*KSENMNCGVTTSPPRVILASVFKNTLTW---VSSTI-- 442
R I ++E++ ++RG E + G+ + F +T + + I
Sbjct: 63 -RSFGIRRNEKIAVHCTVRGAKAEEILERGLKVREYE-LRRENFSSTGNFGFGIQEHIDL 120
Query: 443 -----PQLEFMDWTFTSYLA-ARFQRSTRRRKTGKVGFPHRLTKK 559
P + F L + + R+RK+G VGF HRLTK+
Sbjct: 121 GIKYDPSIGIYGLDFYVVLGRPGYNVNHRKRKSGTVGFQHRLTKE 165
>BT022593-1|AAY55009.1| 163|Drosophila melanogaster IP06777p
protein.
Length = 163
Score = 189 bits (460), Expect = 3e-48
Identities = 96/117 (82%), Positives = 100/117 (85%), Gaps = 4/117 (3%)
Frame = +1
Query: 256 SFGIRRNEKIAVHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIK 435
SFGIRRNEKIAVHCTVRGAKAEEILERGLKVREYELRR+NFS+TGNFGFGIQEHIDLGIK
Sbjct: 43 SFGIRRNEKIAVHCTVRGAKAEEILERGLKVREYELRRENFSSTGNFGFGIQEHIDLGIK 102
Query: 436 YDPSIGIYGLDFYVVLGGQ-VST*HKKA*DRKSGISPPPH---KEDAMKWFQQKYDG 594
YDPSIGIYGLDFYVVLG + H+K RKSG H KEDAMKWFQQKYDG
Sbjct: 103 YDPSIGIYGLDFYVVLGRPGYNVNHRK---RKSGTVGFQHRLTKEDAMKWFQQKYDG 156
>AY094790-1|AAM11143.1| 184|Drosophila melanogaster LD17235p
protein.
Length = 184
Score = 189 bits (460), Expect = 3e-48
Identities = 96/117 (82%), Positives = 100/117 (85%), Gaps = 4/117 (3%)
Frame = +1
Query: 256 SFGIRRNEKIAVHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIK 435
SFGIRRNEKIAVHCTVRGAKAEEILERGLKVREYELRR+NFS+TGNFGFGIQEHIDLGIK
Sbjct: 64 SFGIRRNEKIAVHCTVRGAKAEEILERGLKVREYELRRENFSSTGNFGFGIQEHIDLGIK 123
Query: 436 YDPSIGIYGLDFYVVLGGQ-VST*HKKA*DRKSGISPPPH---KEDAMKWFQQKYDG 594
YDPSIGIYGLDFYVVLG + H+K RKSG H KEDAMKWFQQKYDG
Sbjct: 124 YDPSIGIYGLDFYVVLGRPGYNVNHRK---RKSGTVGFQHRLTKEDAMKWFQQKYDG 177
Score = 105 bits (253), Expect = 4e-23
Identities = 73/165 (44%), Positives = 93/165 (56%), Gaps = 11/165 (6%)
Frame = +2
Query: 98 DNSKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRLLVSVVM 277
D +KN MR+LHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTV
Sbjct: 11 DPAKNPMRDLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTV-------- 62
Query: 278 KRLLSIVQSEELKQKKSLRGV*KSENMNCGVTTSPPRVILASVFKNTLTW---VSSTI-- 442
R I ++E++ ++RG E + G+ + F +T + + I
Sbjct: 63 -RSFGIRRNEKIAVHCTVRGAKAEEILERGLKVREYE-LRRENFSSTGNFGFGIQEHIDL 120
Query: 443 -----PQLEFMDWTFTSYLA-ARFQRSTRRRKTGKVGFPHRLTKK 559
P + F L + + R+RK+G VGF HRLTK+
Sbjct: 121 GIKYDPSIGIYGLDFYVVLGRPGYNVNHRKRKSGTVGFQHRLTKE 165
>AE013599-2887|AAF57560.1| 184|Drosophila melanogaster CG7726-PA
protein.
Length = 184
Score = 189 bits (460), Expect = 3e-48
Identities = 96/117 (82%), Positives = 100/117 (85%), Gaps = 4/117 (3%)
Frame = +1
Query: 256 SFGIRRNEKIAVHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIK 435
SFGIRRNEKIAVHCTVRGAKAEEILERGLKVREYELRR+NFS+TGNFGFGIQEHIDLGIK
Sbjct: 64 SFGIRRNEKIAVHCTVRGAKAEEILERGLKVREYELRRENFSSTGNFGFGIQEHIDLGIK 123
Query: 436 YDPSIGIYGLDFYVVLGGQ-VST*HKKA*DRKSGISPPPH---KEDAMKWFQQKYDG 594
YDPSIGIYGLDFYVVLG + H+K RKSG H KEDAMKWFQQKYDG
Sbjct: 124 YDPSIGIYGLDFYVVLGRPGYNVNHRK---RKSGTVGFQHRLTKEDAMKWFQQKYDG 177
Score = 105 bits (253), Expect = 4e-23
Identities = 73/165 (44%), Positives = 93/165 (56%), Gaps = 11/165 (6%)
Frame = +2
Query: 98 DNSKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRLLVSVVM 277
D +KN MR+LHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTV
Sbjct: 11 DPAKNPMRDLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTV-------- 62
Query: 278 KRLLSIVQSEELKQKKSLRGV*KSENMNCGVTTSPPRVILASVFKNTLTW---VSSTI-- 442
R I ++E++ ++RG E + G+ + F +T + + I
Sbjct: 63 -RSFGIRRNEKIAVHCTVRGAKAEEILERGLKVREYE-LRRENFSSTGNFGFGIQEHIDL 120
Query: 443 -----PQLEFMDWTFTSYLA-ARFQRSTRRRKTGKVGFPHRLTKK 559
P + F L + + R+RK+G VGF HRLTK+
Sbjct: 121 GIKYDPSIGIYGLDFYVVLGRPGYNVNHRKRKSGTVGFQHRLTKE 165
>AY069775-1|AAL39920.1| 2171|Drosophila melanogaster SD01562p
protein.
Length = 2171
Score = 28.7 bits (61), Expect = 7.3
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -1
Query: 211 ELLQHLGGTSQPVTGFTNTDVQAKLSDMKIPHYI 110
ELL HLG Q GF T ++ L + +PHY+
Sbjct: 626 ELLWHLGRDKQTARGFEKTLLKV-LDTLALPHYM 658
>AE013599-2783|AAF57626.1| 2599|Drosophila melanogaster CG15099-PA
protein.
Length = 2599
Score = 28.7 bits (61), Expect = 7.3
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -1
Query: 211 ELLQHLGGTSQPVTGFTNTDVQAKLSDMKIPHYI 110
ELL HLG Q GF T ++ L + +PHY+
Sbjct: 1054 ELLWHLGRDKQTARGFEKTLLKV-LDTLALPHYM 1086
>AF132190-1|AAD34778.1| 1398|Drosophila melanogaster unknown
protein.
Length = 1398
Score = 28.3 bits (60), Expect = 9.7
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +2
Query: 80 GEEGSEDNSKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQL 211
G +GSED+ + N HI + + DR T A KVLE++
Sbjct: 722 GSDGSEDSWETESENSHISSSDNDDDILTGIDRATEAMKVLEKM 765
>AE014297-3357|AAN13952.1| 1398|Drosophila melanogaster CG10254-PB,
isoform B protein.
Length = 1398
Score = 28.3 bits (60), Expect = 9.7
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +2
Query: 80 GEEGSEDNSKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQL 211
G +GSED+ + N HI + + DR T A KVLE++
Sbjct: 722 GSDGSEDSWETESENSHISSSDNDDDILTGIDRATEAMKVLEKM 765
>AE014297-3356|AAF56162.1| 1398|Drosophila melanogaster CG10254-PA,
isoform A protein.
Length = 1398
Score = 28.3 bits (60), Expect = 9.7
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +2
Query: 80 GEEGSEDNSKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQL 211
G +GSED+ + N HI + + DR T A KVLE++
Sbjct: 722 GSDGSEDSWETESENSHISSSDNDDDILTGIDRATEAMKVLEKM 765
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,363,888
Number of Sequences: 53049
Number of extensions: 575880
Number of successful extensions: 1402
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1394
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2806815600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -