Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00226
(658 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U42845-1|AAA83599.1| 196|Caenorhabditis elegans Ribosomal prote... 167 6e-42
U64844-3|AAB18306.1| 196|Caenorhabditis elegans Ribosomal prote... 166 1e-41
AL161712-18|CAC70140.1| 448|Caenorhabditis elegans Hypothetical... 30 1.3
Z74031-14|CAD66220.1| 187|Caenorhabditis elegans Hypothetical p... 29 2.2
Z66497-6|CAA91288.1| 312|Caenorhabditis elegans Hypothetical pr... 29 2.2
Z66497-5|CAA91287.1| 340|Caenorhabditis elegans Hypothetical pr... 29 2.2
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr... 29 2.9
AF016685-7|AAG24151.1| 341|Caenorhabditis elegans Seven tm rece... 29 2.9
>U42845-1|AAA83599.1| 196|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 11.2 protein.
Length = 196
Score = 167 bits (406), Expect = 6e-42
Identities = 81/115 (70%), Positives = 95/115 (82%), Gaps = 2/115 (1%)
Frame = +1
Query: 256 SFGIRRNEKIAVHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIK 435
+FGIRRNEKIAVHCTVRG KAEEILE+GLKV+EYEL ++NFS TGNFGFG+QEHIDLGIK
Sbjct: 66 TFGIRRNEKIAVHCTVRGPKAEEILEKGLKVKEYELYKENFSDTGNFGFGVQEHIDLGIK 125
Query: 436 YDPSIGIYGLDFYVVL--GGQVST*HKKA*DRKSGISPPPHKEDAMKWFQQKYDG 594
YDPSIGIYG+DFYVVL G+ ++A R G S +E+++KWFQQKYDG
Sbjct: 126 YDPSIGIYGMDFYVVLDRAGRRIAKRRRAPGR-VGPSHRVEREESIKWFQQKYDG 179
Score = 98.3 bits (234), Expect = 4e-21
Identities = 48/60 (80%), Positives = 51/60 (85%)
Frame = +2
Query: 77 KGEEGSEDNSKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVR 256
K E E ++NVMR L I+KLCLNICVGESGDRLTRAAKVLEQLTGQ PVFSKARYTVR
Sbjct: 6 KQTEIREKKARNVMRELKIQKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVR 65
>U64844-3|AAB18306.1| 196|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 11.1 protein.
Length = 196
Score = 166 bits (403), Expect = 1e-41
Identities = 79/114 (69%), Positives = 91/114 (79%), Gaps = 1/114 (0%)
Frame = +1
Query: 256 SFGIRRNEKIAVHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIK 435
+FGIRRNEKIAVHCTVRG KAEEILE+GLKV+EYEL ++NFS TGNFGFG+QEHIDLGIK
Sbjct: 66 TFGIRRNEKIAVHCTVRGPKAEEILEKGLKVKEYELFKENFSDTGNFGFGVQEHIDLGIK 125
Query: 436 YDPSIGIYGLDFYVVLG-GQVST*HKKA*DRKSGISPPPHKEDAMKWFQQKYDG 594
YDP IGIYG+DFYVVL V ++ + G S KE+ +KWFQQKYDG
Sbjct: 126 YDPGIGIYGMDFYVVLNRNGVRVSKRRRAPGRIGPSHRVDKEETIKWFQQKYDG 179
Score = 97.9 bits (233), Expect = 6e-21
Identities = 48/60 (80%), Positives = 50/60 (83%)
Frame = +2
Query: 77 KGEEGSEDNSKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVR 256
K E E +NVMR L I+KLCLNICVGESGDRLTRAAKVLEQLTGQ PVFSKARYTVR
Sbjct: 6 KQTEIREKKGRNVMRELKIQKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVR 65
>AL161712-18|CAC70140.1| 448|Caenorhabditis elegans Hypothetical
protein Y66D12A.23 protein.
Length = 448
Score = 30.3 bits (65), Expect = 1.3
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +1
Query: 298 TVRGAKAEEILERGLKVREY-ELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGI 456
++R AEE+ RG + Y E+RR TG FG G + + I + S+ +
Sbjct: 353 SLREQSAEELQRRGCGIDWYLEMRRRGQPPTGGFGIGFERMLQYLIFFRKSLNL 406
>Z74031-14|CAD66220.1| 187|Caenorhabditis elegans Hypothetical
protein F32D8.13 protein.
Length = 187
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = -2
Query: 321 FCFSSSDCTMDSNLFITTDTKRRTVY 244
FC ++ TMDS++ I +D +RRT Y
Sbjct: 86 FCRAAISSTMDSDIVIISDCRRRTDY 111
>Z66497-6|CAA91288.1| 312|Caenorhabditis elegans Hypothetical
protein K08F8.5b protein.
Length = 312
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = -1
Query: 286 QSFHYD--GYQKTHCIPSLGKYRLLSCELLQHLGGTSQPVTGFTNTD 152
+SFHYD ++K + GKY ++ CE + + G NT+
Sbjct: 43 KSFHYDWVNFKKAQSLTIEGKYEMVRCEYSASMYWPEHGLLGCVNTE 89
>Z66497-5|CAA91287.1| 340|Caenorhabditis elegans Hypothetical
protein K08F8.5a protein.
Length = 340
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = -1
Query: 286 QSFHYD--GYQKTHCIPSLGKYRLLSCELLQHLGGTSQPVTGFTNTD 152
+SFHYD ++K + GKY ++ CE + + G NT+
Sbjct: 71 KSFHYDWVNFKKAQSLTIEGKYEMVRCEYSASMYWPEHGLLGCVNTE 117
>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
C41A3.1 protein.
Length = 7829
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = -2
Query: 399 AKITRGGEVVTPQFIFSDFQTPLKDFFCFSSSDCTMDSNLFITTDT 262
AK+ + G ++ PQ FS+F+ + FF + T+ N I+ D+
Sbjct: 5666 AKMLQTG-IIPPQVNFSEFRDGMGQFFTVNGKKSTISQNSLISIDS 5710
>AF016685-7|AAG24151.1| 341|Caenorhabditis elegans Seven tm
receptor protein 86 protein.
Length = 341
Score = 29.1 bits (62), Expect = 2.9
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -2
Query: 360 FIFSDFQTPLKDFF-CFSSSDCTMDSNLFIT 271
++ DF+ +KDFF C SD T S +F T
Sbjct: 300 YVIKDFRIGVKDFFKCGKKSDNTSSSTIFTT 330
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,142,193
Number of Sequences: 27780
Number of extensions: 298897
Number of successful extensions: 803
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 799
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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