Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00226
(658 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g45775.2 68418.m05629 60S ribosomal protein L11 (RPL11D) 148 4e-36
At5g45775.1 68418.m05628 60S ribosomal protein L11 (RPL11D) 148 4e-36
At4g18730.1 68417.m02768 60S ribosomal protein L11 (RPL11C) 148 4e-36
At3g58700.1 68416.m06542 60S ribosomal protein L11 (RPL11B) ribo... 148 4e-36
At2g42740.1 68415.m05293 60S ribosomal protein L11 (RPL11A) 148 4e-36
At1g04840.1 68414.m00480 pentatricopeptide (PPR) repeat-containi... 37 0.014
At2g32810.1 68415.m04016 beta-galactosidase, putative / lactase,... 30 1.2
At3g13880.1 68416.m01754 pentatricopeptide (PPR) repeat-containi... 29 3.6
At4g14280.1 68417.m02201 hypothetical protein 28 4.8
At3g06210.1 68416.m00714 expressed protein contains Prosite PS00... 28 4.8
At5g64420.1 68418.m08092 DNA polymerase V family contains Pfam d... 28 6.3
At4g26330.1 68417.m03786 subtilase family protein contains simil... 28 6.3
At3g52180.1 68416.m05729 protein tyrosine phosphatase/kinase int... 28 6.3
At2g16950.1 68415.m01953 importin beta-2 subunit family protein ... 28 6.3
At1g08710.1 68414.m00967 F-box family protein similar to ESTs gb... 28 6.3
At2g47070.1 68415.m05881 squamosa promoter-binding protein-like ... 27 8.3
>At5g45775.2 68418.m05629 60S ribosomal protein L11 (RPL11D)
Length = 182
Score = 148 bits (358), Expect = 4e-36
Identities = 76/116 (65%), Positives = 88/116 (75%), Gaps = 3/116 (2%)
Frame = +1
Query: 256 SFGIRRNEKIAVHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIK 435
SFGIRRNEKIA + TVRG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIK
Sbjct: 58 SFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIK 117
Query: 436 YDPSIGIYGLDFYVVL---GGQVST*HKKA*DRKSGISPPPHKEDAMKWFQQKYDG 594
YDPS GIYG+DFYVVL G +V+ ++ + GI K+DAMKWFQ KY+G
Sbjct: 118 YDPSTGIYGMDFYVVLERPGYRVA--RRRRCKTRVGIQHRVTKDDAMKWFQVKYEG 171
Score = 83.0 bits (196), Expect = 2e-16
Identities = 40/55 (72%), Positives = 46/55 (83%)
Frame = +2
Query: 92 SEDNSKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVR 256
SE N MR++ ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVR
Sbjct: 3 SEKKLSNPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVR 57
>At5g45775.1 68418.m05628 60S ribosomal protein L11 (RPL11D)
Length = 172
Score = 148 bits (358), Expect = 4e-36
Identities = 76/116 (65%), Positives = 88/116 (75%), Gaps = 3/116 (2%)
Frame = +1
Query: 256 SFGIRRNEKIAVHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIK 435
SFGIRRNEKIA + TVRG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIK
Sbjct: 48 SFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIK 107
Query: 436 YDPSIGIYGLDFYVVL---GGQVST*HKKA*DRKSGISPPPHKEDAMKWFQQKYDG 594
YDPS GIYG+DFYVVL G +V+ ++ + GI K+DAMKWFQ KY+G
Sbjct: 108 YDPSTGIYGMDFYVVLERPGYRVA--RRRRCKTRVGIQHRVTKDDAMKWFQVKYEG 161
Score = 79.0 bits (186), Expect = 3e-15
Identities = 37/47 (78%), Positives = 43/47 (91%)
Frame = +2
Query: 116 MRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVR 256
MR++ ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVR
Sbjct: 1 MRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVR 47
>At4g18730.1 68417.m02768 60S ribosomal protein L11 (RPL11C)
Length = 182
Score = 148 bits (358), Expect = 4e-36
Identities = 76/116 (65%), Positives = 88/116 (75%), Gaps = 3/116 (2%)
Frame = +1
Query: 256 SFGIRRNEKIAVHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIK 435
SFGIRRNEKIA + TVRG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIK
Sbjct: 58 SFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIK 117
Query: 436 YDPSIGIYGLDFYVVL---GGQVST*HKKA*DRKSGISPPPHKEDAMKWFQQKYDG 594
YDPS GIYG+DFYVVL G +V+ ++ + GI K+DAMKWFQ KY+G
Sbjct: 118 YDPSTGIYGMDFYVVLERPGYRVA--RRRRCKTRVGIQHRVTKDDAMKWFQVKYEG 171
Score = 83.0 bits (196), Expect = 2e-16
Identities = 40/55 (72%), Positives = 46/55 (83%)
Frame = +2
Query: 92 SEDNSKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVR 256
SE N MR++ ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVR
Sbjct: 3 SEKKLSNPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVR 57
>At3g58700.1 68416.m06542 60S ribosomal protein L11 (RPL11B)
ribosomal protein L11, cytosolic, Arabidopsis thaliana,
PIR:S49033
Length = 182
Score = 148 bits (358), Expect = 4e-36
Identities = 76/116 (65%), Positives = 88/116 (75%), Gaps = 3/116 (2%)
Frame = +1
Query: 256 SFGIRRNEKIAVHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIK 435
SFGIRRNEKIA + TVRG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIK
Sbjct: 58 SFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIK 117
Query: 436 YDPSIGIYGLDFYVVL---GGQVST*HKKA*DRKSGISPPPHKEDAMKWFQQKYDG 594
YDPS GIYG+DFYVVL G +V+ ++ + GI K+DAMKWFQ KY+G
Sbjct: 118 YDPSTGIYGMDFYVVLERPGYRVA--RRRRCKTRVGIQHRVTKDDAMKWFQVKYEG 171
Score = 83.0 bits (196), Expect = 2e-16
Identities = 40/55 (72%), Positives = 46/55 (83%)
Frame = +2
Query: 92 SEDNSKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVR 256
SE N MR++ ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVR
Sbjct: 3 SEKKLSNPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVR 57
>At2g42740.1 68415.m05293 60S ribosomal protein L11 (RPL11A)
Length = 172
Score = 148 bits (358), Expect = 4e-36
Identities = 76/116 (65%), Positives = 88/116 (75%), Gaps = 3/116 (2%)
Frame = +1
Query: 256 SFGIRRNEKIAVHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIK 435
SFGIRRNEKIA + TVRG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIK
Sbjct: 48 SFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIK 107
Query: 436 YDPSIGIYGLDFYVVL---GGQVST*HKKA*DRKSGISPPPHKEDAMKWFQQKYDG 594
YDPS GIYG+DFYVVL G +V+ ++ + GI K+DAMKWFQ KY+G
Sbjct: 108 YDPSTGIYGMDFYVVLERPGYRVA--RRRRCKARVGIQHRVTKDDAMKWFQVKYEG 161
Score = 79.0 bits (186), Expect = 3e-15
Identities = 37/47 (78%), Positives = 43/47 (91%)
Frame = +2
Query: 116 MRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVR 256
MR++ ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVR
Sbjct: 1 MRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVR 47
>At1g04840.1 68414.m00480 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 665
Score = 36.7 bits (81), Expect = 0.014
Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Frame = +1
Query: 322 EILERGLKVREYELRR--DNFSATGNFGFGIQEH---IDLGIKYDPSIGIYGLDFYVVLG 486
E+LE+GLK EY + S +G G GI+ H +D GIK D +IG +D Y G
Sbjct: 283 EMLEKGLKPNEYTIAAVLSACSKSGALGSGIRIHGYILDNGIKLDRAIGTALVDMYAKCG 342
>At2g32810.1 68415.m04016 beta-galactosidase, putative / lactase,
putative similar to beta-galactosidase GI:7939617 from
[Lycopersicon esculentum]
Length = 887
Score = 30.3 bits (65), Expect = 1.2
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Frame = -2
Query: 354 FSDFQTPLKDFFCFSSSDCTMDSNLFITTDT--KRRTVYLALENTGCCPVSCSNTLAARV 181
F+ + TP FS C ++L I ++ R + ++ + NT CS TL
Sbjct: 812 FASYGTPRGSCDGFSIGKCHASNSLSIVSEACKGRNSCFIEVSNTAFISDPCSGTLKTLA 871
Query: 180 SLSPDSPTQ 154
+S SP+Q
Sbjct: 872 VMSRCSPSQ 880
>At3g13880.1 68416.m01754 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 748
Score = 28.7 bits (61), Expect = 3.6
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +1
Query: 319 EEILERGLKVREYELRRDNFSATGNFGF-GIQEHIDLGIKYDPSIGIYGLDFYVVL 483
E+ +E L+ RE L+ D F+ G GF G + +DLG + + GL V L
Sbjct: 130 EQAMELFLEAREANLKLDKFTYAGALGFCGERCDLDLGELLHGLVVVNGLSQQVFL 185
>At4g14280.1 68417.m02201 hypothetical protein
Length = 798
Score = 28.3 bits (60), Expect = 4.8
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +2
Query: 416 TLTWVSSTIPQLEFMDWTFTSYLAAR 493
T TW SS +P L + W F S +R
Sbjct: 167 TRTWKSSDVPMLPYTGWVFVSRNVSR 192
>At3g06210.1 68416.m00714 expressed protein contains Prosite
PS00616: Histidine acid phosphatases phosphohistidine
signature;
Length = 840
Score = 28.3 bits (60), Expect = 4.8
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = +2
Query: 365 GVTTSPPRVILASVF--KNTLTWVSSTIPQLEFMDWTFTSYLAAR 493
G+ + R+ +F + TLTW +S +P L + W + S +R
Sbjct: 182 GLREATTRIGRQEIFDRRTTLTWKNSEVPLLPYARWLYISSYVSR 226
>At5g64420.1 68418.m08092 DNA polymerase V family contains Pfam
domain PF04931: DNA polymerase V
Length = 1306
Score = 27.9 bits (59), Expect = 6.3
Identities = 20/84 (23%), Positives = 35/84 (41%)
Frame = +2
Query: 131 IRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRLLVSVVMKRLLSIVQSEE 310
I +L L + + ++ LEQ F K T++ + SV + R L+ +
Sbjct: 702 IEQLQLLLSNSQKIEKPLSKGNALEQPDDPVSYFMKFLSTLQNIPSVSLFRSLNEADEKA 761
Query: 311 LKQKKSLRGV*KSENMNCGVTTSP 382
K+ + E NCG++T P
Sbjct: 762 FKELQETESKLLKEERNCGLSTDP 785
>At4g26330.1 68417.m03786 subtilase family protein contains
similarity to SBT1, a subtilase from tomato plants
GI:1771160 from [Lycopersicon esculentum]
Length = 746
Score = 27.9 bits (59), Expect = 6.3
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = -3
Query: 398 PKLPVAEKLSRRNSYSLTFKPLSRISSALAPRTVQWT 288
P++ V K + +SY +TFKP S + WT
Sbjct: 687 PRILVFSKCQQEHSYYVTFKPTEIFSGRYVFGEIMWT 723
>At3g52180.1 68416.m05729 protein tyrosine phosphatase/kinase
interaction sequence protein (PTPKIS1) identical to
PTPKIS1 protein [Arabidopsis thaliana] GI:11595504;
contains Pfam profile PF00782: Dual specificity
phosphatase, catalytic domain
Length = 379
Score = 27.9 bits (59), Expect = 6.3
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -2
Query: 318 CFSSSDCTMDSNLFITTDTKRRTVYLALENTGCCPVSCS 202
CF D ++ + I T KR+TV L L++ G V S
Sbjct: 234 CFPKLDAIRNATIDILTGLKRKTVTLTLKDKGFSRVEIS 272
>At2g16950.1 68415.m01953 importin beta-2 subunit family protein
similar to SP|Q92973 Importin beta-2 subunit
(Transportin) {Homo sapiens}; contains Pfam profile
PF03810: Importin-beta N-terminal domain
Length = 891
Score = 27.9 bits (59), Expect = 6.3
Identities = 14/53 (26%), Positives = 27/53 (50%)
Frame = +2
Query: 86 EGSEDNSKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKAR 244
EG +++++ ++R L LN C+ E+ D A ++ L PV+ + R
Sbjct: 650 EGLGSGIESLVQQSNLRDLLLNCCIDEAADVRQSAFALMGDLARVFPVYLQPR 702
>At1g08710.1 68414.m00967 F-box family protein similar to ESTs
gb|T22270 and gb|T76886 ; similar to SKP1 interacting
partner 2 (SKIP2) TIGR_Ath1:At5g67250
Length = 274
Score = 27.9 bits (59), Expect = 6.3
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +1
Query: 244 VYSASFGIRRNEKIAVHCTVRGAKAEEILERGLKVREYELR 366
+Y F + K+A H K EI E G ++RE E R
Sbjct: 75 IYMTRFEREKERKLAAHRRALLRKESEISEWGRRIRELEAR 115
>At2g47070.1 68415.m05881 squamosa promoter-binding protein-like 1
(SPL1) identical to squamosa promoter binding
protein-like 1 [Arabidopsis thaliana] GI:5931655;
contains Pfam profile PF03110: SBP domain
Length = 881
Score = 27.5 bits (58), Expect = 8.3
Identities = 21/68 (30%), Positives = 32/68 (47%)
Frame = -2
Query: 402 EAKITRGGEVVTPQFIFSDFQTPLKDFFCFSSSDCTMDSNLFITTDTKRRTVYLALENTG 223
EA+I GGE QF S + ++ + +D D +LF+ T T R + L N+
Sbjct: 2 EARIDEGGEA--QQFYGSVGKRSVE----WDLNDWKWDGDLFLATQTTRGRQFFPLGNSS 55
Query: 222 CCPVSCSN 199
SCS+
Sbjct: 56 NSSSSCSD 63
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,340,028
Number of Sequences: 28952
Number of extensions: 279394
Number of successful extensions: 847
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 836
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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