Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00224
         (719 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex ...    28   1.2  
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po...    25   8.2  
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    25   8.2  
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    25   8.2  

>SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex
           subunit Sld3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 668

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = -2

Query: 214 EQSIQDRLCSIENKK-NRFFKAFLNASLNFKSLYTV*THQLQK 89
           + S  ++L  IE+ + +R+   FL+  L+FKSL  +  HQL K
Sbjct: 73  KSSKANQLVGIEHVEGSRYALIFLSEKLDFKSLKVIANHQLTK 115


>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1313

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = -2

Query: 577 LNMYIYSSPPPCVVFLIAEGRDHLLYHLRTQISLHPFLSLAVWSGHI*LTV 425
           L+  + S  PP  + L+ +     ++ LR  I L  FL L VW+  + L++
Sbjct: 478 LSQGLISRKPPDQLPLVLQVLLSQVHRLRALILLSKFLDLGVWAVDLALSI 528


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = -2

Query: 160 FKAFLNASLNFKSLYTV*THQLQKLDDRQPADGHDS 53
           F   + +S+ F SLY + THQ   L     +   +S
Sbjct: 737 FSTMIRSSMQFVSLYYIRTHQSNTLSSESESRNSES 772


>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 116

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 8/56 (14%)
 Frame = -2

Query: 145 NASLNFKSLYTV*THQLQKLDDR--------QPADGHDSLLNLNFIIIIARRVLVS 2
           NA + F  + +V  H+ +K  DR        +P D  +++ N+N+ I+  R + VS
Sbjct: 24  NAFIPFGEIISVALHRKEKAVDRSYAFVEFDEPEDAKEAMENMNYSILCDRCIRVS 79


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,734,753
Number of Sequences: 5004
Number of extensions: 54133
Number of successful extensions: 115
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)