Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00224
         (719 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50832| Best HMM Match : Homeobox (HMM E-Value=8.7e-23)              34   0.13 
SB_8666| Best HMM Match : Flagellar_rod (HMM E-Value=2.5)              30   1.6  

>SB_50832| Best HMM Match : Homeobox (HMM E-Value=8.7e-23)
          Length = 285

 Score = 33.9 bits (74), Expect = 0.13
 Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
 Frame = -2

Query: 166 RFFKAFLNASLNFKSLYTV*TH-QLQKLDDRQPADGHDSLLNLN 38
           ++F+AF N S  F+ + TV T  QLQKL+DR   D + S  + N
Sbjct: 192 KYFRAFFNESRRFRRIRTVFTRDQLQKLEDRFKHDKYLSTQDRN 235


>SB_8666| Best HMM Match : Flagellar_rod (HMM E-Value=2.5)
          Length = 895

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -3

Query: 495 FARRFLSIHSCLWRCGVDIYS*QFKNVKLLG 403
           F RR L ++    RC +D+YS Q ++  +LG
Sbjct: 675 FTRRLLGVYLTFTRCLLDVYSKQLQSFSILG 705



 Score = 29.5 bits (63), Expect = 2.9
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -3

Query: 498 TFARRFLSIHSCLWRCGVDIYS 433
           TF RR L ++S + RC +D+YS
Sbjct: 542 TFTRRLLGVYSTVTRCLLDVYS 563


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,653,569
Number of Sequences: 59808
Number of extensions: 372070
Number of successful extensions: 779
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 779
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)