Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00224
         (719 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    23   2.9  
EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    22   5.1  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    22   6.7  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    21   8.9  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    21   8.9  

>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 10/44 (22%), Positives = 21/44 (47%)
 Frame = +2

Query: 443 STPHRQRQEWMERNLRAKVIQKVVTTLSNEEYDARRRRAIYVHI 574
           S   R+R+   ER + + +    ++ +SN   D    + +Y +I
Sbjct: 67  SRDKRERERSKERKIISSLSNNYISNISNYNNDNNYNKKLYYNI 110


>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 6/20 (30%), Positives = 13/20 (65%)
 Frame = -1

Query: 485 DFSPSILVSGGVEWTYIANS 426
           + SP++L+  G+ W  + +S
Sbjct: 76  EISPAMLLDNGIPWVILGHS 95


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = -2

Query: 517 RDHLLYHLRTQISLHPF 467
           + HL YHLR      PF
Sbjct: 1   KHHLEYHLRNHFGSKPF 17


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +2

Query: 518 TLSNEEYDARRRRAIYV 568
           TLSN+EY+  R  AI V
Sbjct: 82  TLSNKEYNMLRTTAINV 98


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -1

Query: 356 SNNVLSFQNKVTTNKMFLV 300
           +NN+ +FQN V   K+ +V
Sbjct: 4   TNNIAAFQNVVLVKKVKIV 22


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,101
Number of Sequences: 438
Number of extensions: 3592
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22292145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)