Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00223
         (801 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2C4.06c |||rRNA methyltransferase |Schizosaccharomyces pombe...    30   0.44 
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos...    29   1.0  
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc...    27   2.3  
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    27   4.1  
SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr 1|||Ma...    26   5.4  
SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase |S...    26   5.4  
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb...    26   7.2  
SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   9.5  

>SPAC2C4.06c |||rRNA methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 455

 Score = 29.9 bits (64), Expect = 0.44
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = -1

Query: 351 VERGLLFPSLRHLRYSSCSLH 289
           ++  L FP+ RH+ YS+CS+H
Sbjct: 328 LKHALQFPNCRHVTYSTCSVH 348


>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 855

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 19/64 (29%), Positives = 32/64 (50%)
 Frame = +3

Query: 126 KQKSDKDQATVGSISKNNMLSSFTLKLDMRLAPTTRAELSDNKDISWTILLRNRSAKNMN 305
           K K+D    + G +  N  LSS  + LD  +    + + S+N+  S ++L    SA N+N
Sbjct: 720 KPKADSKSISPGFVGGNQSLSSERIPLDPSMRSPLQQQSSENESKSQSML----SANNLN 775

Query: 306 YILN 317
             +N
Sbjct: 776 AGVN 779


>SPAC328.05 |||RNA-binding protein involved in export of
           mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +1

Query: 502 RRLHI-GEHGERKPHLSNLESHLDRMR 579
           R LH  GEH ER PHL N + +  + R
Sbjct: 40  RGLHFDGEHTERDPHLGNGQKYTQQER 66


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2104

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 10/31 (32%), Positives = 22/31 (70%)
 Frame = +3

Query: 171  KNNMLSSFTLKLDMRLAPTTRAELSDNKDIS 263
            +N++L +   K++++L   T++ + DNKD+S
Sbjct: 1451 RNSVLQTEFEKINLKLKEATKSGILDNKDLS 1481


>SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 899

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 18/69 (26%), Positives = 31/69 (44%)
 Frame = +2

Query: 281 EQKCKEHELYLKCLKDGNSKPLSTGKTWPLSDKDDDVMIIEDELPPIDAEDEIVTCDQAP 460
           E K KE+E +L C+     +  S+  T   + K D  MI+ +     D ++  +   +  
Sbjct: 691 ETKLKEYEQHLSCVNISKKQVSSSSDTSFGNTKMDSSMILSNSEAVSDEQERELIESEKH 750

Query: 461 REKLRPKLL 487
           R KL  + L
Sbjct: 751 RMKLESENL 759


>SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 678

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +1

Query: 523 HGERKPHLSNLESHLDRMRNNLTTK 597
           HGE+ PH + LE  L+  R N T K
Sbjct: 490 HGEKIPHPNGLEYTLEGPRKNWTGK 514


>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 741

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -1

Query: 636 HPPVLLPIPHHYRLR 592
           HPP+L  IPH + LR
Sbjct: 162 HPPILFIIPHSHTLR 176


>SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 433

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +3

Query: 123 PKQKSDKDQATVGSISKNNMLSSFTLKLDMRLAPTTRAELSD 248
           P+Q+S  D A + ++   +  SS     D  L+ T  AEL+D
Sbjct: 202 PEQQSGPDVAELNTLPNRSKTSSQASVSDEELSRTELAELND 243


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,651,112
Number of Sequences: 5004
Number of extensions: 48099
Number of successful extensions: 153
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)