Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00223
         (801 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0351 + 9257204-9261388                                           32   0.61 
01_06_1656 + 38946922-38947542,38947640-38947739,38948045-389481...    31   0.81 
12_01_0798 + 7314885-7314953,7315324-7315387,7315489-7315677,731...    28   7.5  
04_04_1081 - 30700791-30700904,30701011-30703053,30703126-30704376     28   7.5  
06_01_0875 + 6707483-6709394,6709750-6709829,6710077-6710174,671...    28   9.9  
02_02_0178 + 7490447-7490659,7490996-7491112,7491337-7491517,749...    28   9.9  

>02_02_0351 + 9257204-9261388
          Length = 1394

 Score = 31.9 bits (69), Expect = 0.61
 Identities = 16/33 (48%), Positives = 20/33 (60%)
 Frame = -1

Query: 351  VERGLLFPSLRHLRYSSCSLHFCSLIKLSN*CP 253
            VE G++FPS++ L  S C L   SL KL N  P
Sbjct: 1054 VEEGVIFPSVQQLEISDCRLTRNSLTKLLNRFP 1086


>01_06_1656 +
           38946922-38947542,38947640-38947739,38948045-38948189,
           38948868-38948991,38949443-38949960,38950111-38950458,
           38950557-38950638,38951309-38951707,38951790-38951927,
           38952063-38952108,38952200-38952369
          Length = 896

 Score = 31.5 bits (68), Expect = 0.81
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +3

Query: 513 YWGTWRKKTTFVKPRKPFGQD 575
           Y+GTWRKK+  V PR P   D
Sbjct: 611 YYGTWRKKSAVVGPRCPLKMD 631


>12_01_0798 +
           7314885-7314953,7315324-7315387,7315489-7315677,
           7316430-7316625,7316727-7316953,7317177-7318134,
           7320104-7321307,7321517-7321876,7321965-7323195,
           7323334-7323599,7323738-7326335
          Length = 2453

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 9/80 (11%)
 Frame = +3

Query: 156 VGSISKNNMLSSFTLKLDMRLA----PTTRAELSDNKDISW-----TILLRNRSAKNMNY 308
           + ++  N  ++ F L  D R A    P    +LSD KDISW      ++++ + + NM Y
Sbjct: 301 IATLDLNGSVNIFVLANDKRSASLHPPRNGTQLSDVKDISWWTDNILMVVKEKGSINM-Y 359

Query: 309 ILNALRMETVNLFLLARPGL 368
            ++  R+ + +  +L+ P L
Sbjct: 360 SISGNRVVSEDGHVLSTPQL 379


>04_04_1081 - 30700791-30700904,30701011-30703053,30703126-30704376
          Length = 1135

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 19/52 (36%), Positives = 24/52 (46%)
 Frame = +2

Query: 326  DGNSKPLSTGKTWPLSDKDDDVMIIEDELPPIDAEDEIVTCDQAPREKLRPK 481
            D    P +T     LS  D +V+  EDE  P    DE    D AP E+ RP+
Sbjct: 892  DPQDGPEATAGRPLLSSSDPEVIGTEDECAPRAHLDEERPGDAAPSEEDRPR 943


>06_01_0875 +
           6707483-6709394,6709750-6709829,6710077-6710174,
           6710704-6710840,6710961-6711301,6711402-6711599
          Length = 921

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = +3

Query: 165 ISKNNMLSSFTLKLDMRLAPTTRAELSDNKDISWTILLR 281
           +S N M+S +T   DM+ +     E+ D   +SW ++++
Sbjct: 271 VSWNTMISGYTQASDMKESEKLFWEMPDPDTVSWNLIIQ 309


>02_02_0178 +
           7490447-7490659,7490996-7491112,7491337-7491517,
           7491594-7491679,7491785-7491889,7492059-7492121,
           7492404-7492513,7492644-7492763,7492833-7492908,
           7493254-7493327,7493474-7493594,7495559-7495656,
           7495735-7495858,7496373-7496504
          Length = 539

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +3

Query: 456 HLVKSLDPNY*ASMKPTAPYWGTWRKKTTFVKPRKPFGQDEK 581
           H  +SLD      M+P   Y G W +  T V+ R P  Q E+
Sbjct: 479 HWKESLDDPDTKIMRPQQVYTGVWLRHYTPVRERVPASQGEQ 520


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,631,363
Number of Sequences: 37544
Number of extensions: 299644
Number of successful extensions: 1008
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 980
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1008
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)