Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00223
         (801 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1052| Best HMM Match : No HMM Matches (HMM E-Value=.)               38   0.009
SB_58916| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  
SB_53604| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  
SB_42525| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  

>SB_1052| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1092

 Score = 37.9 bits (84), Expect = 0.009
 Identities = 14/21 (66%), Positives = 17/21 (80%)
 Frame = +2

Query: 710 FVPHGYLSDEEATMEDDEYYH 772
           FVPHGYLSD+E   ED+E+ H
Sbjct: 19  FVPHGYLSDDEGIEEDEEFVH 39


>SB_58916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 407

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 18/52 (34%), Positives = 28/52 (53%)
 Frame = +3

Query: 162 SISKNNMLSSFTLKLDMRLAPTTRAELSDNKDISWTILLRNRSAKNMNYILN 317
           SIS   +LS  T KL  R+       L DN D  WT  L+++S   +++I++
Sbjct: 171 SISSGEILSGQTDKLASRIHHMKERILVDNSDEVWT-QLQDKSNGRVDFIMD 221


>SB_53604| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 655

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +2

Query: 254 GHQLDNFIKEQKCKEHELYLKCLKDGNSKPLSTGKTWPLS 373
           GH +D   K    +EH   +KC+    S+  S G  WPLS
Sbjct: 136 GHVIDP--KGDVSREHTDLVKCVVCHESRVYSAGTPWPLS 173


>SB_42525| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 162

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
 Frame = +3

Query: 645 DGSAVGSDDEQDGDE---YEVDMKCLYRTD 725
           DGS  GS+++ DGD+   YE D  C Y  D
Sbjct: 120 DGSGGGSNNDDDGDDDSGYENDNNCDYDDD 149


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,493,910
Number of Sequences: 59808
Number of extensions: 348428
Number of successful extensions: 1091
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 990
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1090
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2215746665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)