Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00223
         (801 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024206-4|AAK67240.1|  564|Caenorhabditis elegans Hypothetical ...    29   5.1  
AC024206-3|AAF36052.1|  561|Caenorhabditis elegans Hypothetical ...    29   5.1  
AL132876-33|CAI79187.1| 1133|Caenorhabditis elegans Hypothetical...    28   6.8  
AL132876-32|CAD56252.2| 1172|Caenorhabditis elegans Hypothetical...    28   6.8  
AL132902-13|CAL64008.1|  913|Caenorhabditis elegans Hypothetical...    28   8.9  

>AC024206-4|AAK67240.1|  564|Caenorhabditis elegans Hypothetical
           protein Y74C9A.4b protein.
          Length = 564

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 17/84 (20%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
 Frame = +2

Query: 308 YLKCLKDGNSKPLSTGKTWPLSDKDDDVMIIEDELPPIDAEDEIV--TCDQAPREKLRPK 481
           YL+ ++  N K +         ++DDD+M+++D L    +   IV  + +  P ++   +
Sbjct: 337 YLELMEPANGKAIKRLGIGKEKEEDDDIMVVDDCLLRKPSGPYIVEQSIEADPIDENTCR 396

Query: 482 LLSFHETDG--SILGNMEKENHIC 547
           +    +T    +++ N+++++H+C
Sbjct: 397 MTRCFDTPAALALIDNIKRKHHMC 420


>AC024206-3|AAF36052.1|  561|Caenorhabditis elegans Hypothetical
           protein Y74C9A.4a protein.
          Length = 561

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 17/84 (20%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
 Frame = +2

Query: 308 YLKCLKDGNSKPLSTGKTWPLSDKDDDVMIIEDELPPIDAEDEIV--TCDQAPREKLRPK 481
           YL+ ++  N K +         ++DDD+M+++D L    +   IV  + +  P ++   +
Sbjct: 334 YLELMEPANGKAIKRLGIGKEKEEDDDIMVVDDCLLRKPSGPYIVEQSIEADPIDENTCR 393

Query: 482 LLSFHETDG--SILGNMEKENHIC 547
           +    +T    +++ N+++++H+C
Sbjct: 394 MTRCFDTPAALALIDNIKRKHHMC 417


>AL132876-33|CAI79187.1| 1133|Caenorhabditis elegans Hypothetical
            protein Y105E8A.26b protein.
          Length = 1133

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +2

Query: 293  KEHELYLKCLKDGNSKPLSTGK 358
            +EHE+Y+K  ++G+S P+   K
Sbjct: 1034 QEHEIYVKVCREGDSSPIDRSK 1055


>AL132876-32|CAD56252.2| 1172|Caenorhabditis elegans Hypothetical
            protein Y105E8A.26a protein.
          Length = 1172

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +2

Query: 293  KEHELYLKCLKDGNSKPLSTGK 358
            +EHE+Y+K  ++G+S P+   K
Sbjct: 1073 QEHEIYVKVCREGDSSPIDRSK 1094


>AL132902-13|CAL64008.1|  913|Caenorhabditis elegans Hypothetical
           protein Y71A12B.17 protein.
          Length = 913

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = -3

Query: 259 MSLLSLNSALVVGANLMSNFKVKLDSILFLLIEPTVAWSLSDFCF 125
           + LL+LN A +V    +      +DS +FLL   +++W L   C+
Sbjct: 87  LPLLTLNRASIVTFGFLLLIYQAIDSNVFLLYLYSISWGLIAACY 131


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,705,417
Number of Sequences: 27780
Number of extensions: 276591
Number of successful extensions: 1053
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 946
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1052
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)