Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00223
         (801 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g21300.1 68415.m02535 kinesin motor family protein contains P...    30   2.1  
At4g31420.2 68417.m04461 zinc finger (C2H2 type) family protein ...    29   3.6  
At4g31420.1 68417.m04460 zinc finger (C2H2 type) family protein ...    29   3.6  
At3g13930.1 68416.m01759 dihydrolipoamide S-acetyltransferase, p...    29   3.6  
At1g13330.1 68414.m01547 expressed protein similar to nuclear re...    29   3.6  
At1g03050.1 68414.m00277 epsin N-terminal homology (ENTH) domain...    29   3.6  
At4g05470.1 68417.m00829 F-box family protein (FBL21) contains s...    29   4.7  
At1g21640.1 68414.m02709 ATP-NAD kinase family protein contains ...    29   4.7  
At5g53240.1 68418.m06618 expressed protein contains Pfam profile...    28   6.3  

>At2g21300.1 68415.m02535 kinesin motor family protein contains Pfam
           profile: kinesin motor domain PF00225
          Length = 862

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +2

Query: 320 LKDGNSKPLSTGKTWPLSDKDDDVMIIEDELPPIDAEDE 436
           + DG S PLST +    S  DDD   +E+E+ P  + D+
Sbjct: 467 ISDGTSTPLSTARAHVRSHSDDD---LEEEMSPRHSGDQ 502


>At4g31420.2 68417.m04461 zinc finger (C2H2 type) family protein
           contains Pfam profile: PF00096 zinc finger, C2H2 type
          Length = 405

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 648 GSAVGSDDEQDGDEYEVDMKCLYRTD 725
           GSA   DD+ D D+YE+D  C    D
Sbjct: 159 GSAEDMDDDGDADKYELDPTCCLMCD 184


>At4g31420.1 68417.m04460 zinc finger (C2H2 type) family protein
           contains Pfam profile: PF00096 zinc finger, C2H2 type
          Length = 404

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 648 GSAVGSDDEQDGDEYEVDMKCLYRTD 725
           GSA   DD+ D D+YE+D  C    D
Sbjct: 159 GSAEDMDDDGDADKYELDPTCCLMCD 184


>At3g13930.1 68416.m01759 dihydrolipoamide S-acetyltransferase,
           putative similar to dihydrolipoamide S-acetyltransferase
           [Zea mays] GI:5669871; contains Pfam profiles PF00198:
           2-oxo acid dehydrogenases acyltransferase (catalytic
           domain), PF00364: Biotin-requiring enzyme, PF02817: e3
           binding domain
          Length = 539

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 24/99 (24%), Positives = 40/99 (40%), Gaps = 4/99 (4%)
 Frame = +2

Query: 260 QLDNFIKEQKCKEHELYLKCLKDGNSKPLSTGKTWPLSDKD-DDVMIIEDELPPID---A 427
           + D    E +C E     K +K+  +K +  G+   ++ +D DD+   +D  P  D   A
Sbjct: 149 ETDKATVEMECMEEGFLAKIVKEEGAKEIQVGEVIAITVEDEDDIQKFKDYTPSSDTGPA 208

Query: 428 EDEIVTCDQAPREKLRPKLLSFHETDGSILGNMEKENHI 544
             E       P+E+   K  S  E   S   +   E+ I
Sbjct: 209 APEAKPAPSLPKEEKVEKPASAPEAKISKPSSAPSEDRI 247


>At1g13330.1 68414.m01547 expressed protein similar to nuclear
           receptor coactivator GT198 (GI:16506273) {Rattus
           norvegicus}; similar to TBP-1 interacting protein
           (GI:7328534) [Homo sapiens]
          Length = 226

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 12/37 (32%), Positives = 24/37 (64%)
 Frame = +1

Query: 529 ERKPHLSNLESHLDRMRNNLTTKSIVMRNGKKNRRVK 639
           E+K  +S++ES +  +++NLT + I  ++ K  + VK
Sbjct: 97  EKKKTISDVESEIKSLQSNLTLEEIQEKDAKLRKEVK 133


>At1g03050.1 68414.m00277 epsin N-terminal homology (ENTH)
           domain-containing protein / clathrin assembly
           protein-related contains Pfam PF01417: ENTH domain. ENTH
           (Epsin N-terminal homology) domain; similar to CLATHRIN
           COAT ASSEMBLY PROTEIN AP180 - Mus musculus,
           SWISSPROT:Q61548
          Length = 599

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 17/74 (22%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
 Frame = +2

Query: 263 LDNFIKEQKCKEHELYLKCLKDGNSKPLSTGKTWPLSDKDDDVMIIED-ELPPIDAEDEI 439
           +D FI+++   EH    K +K    +     +T  ++++ +D+  I+    PP   ED++
Sbjct: 318 MDEFIRDKSALEHTKQSKSVKSEADEDDDEARTEEVNEEQEDMNAIKALPEPPPKEEDDV 377

Query: 440 VTCDQAPREKLRPK 481
              ++A  E +  K
Sbjct: 378 KPEEEAKEEVIIEK 391


>At4g05470.1 68417.m00829 F-box family protein (FBL21) contains
           similarity to N7 protein GI:3273101 from [Medicago
           truncatula]
          Length = 576

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +2

Query: 347 STGKTWPLSDKDDDVMIIEDELPPIDAEDE 436
           S G+ WP SDK D  ++  D++ P++ +D+
Sbjct: 470 SLGRLWPASDKYDSNVL--DDMGPLECDDD 497


>At1g21640.1 68414.m02709 ATP-NAD kinase family protein contains
           similarity to NAD kinase [Homo sapiens]
           gi|20070086|gb|AAM01195; contains Pfam domain, PF01513:
           ATP-NAD kinase
          Length = 985

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
 Frame = +2

Query: 311 LKCLKDGNSKPLSTGKTWPLSDKDDDVMIIEDELPPIDA-EDEIVTCDQAPREKLRPKLL 487
           L  L  G  + LS   +   S   DDV + E+ LPP+     E+  C ++    L   L 
Sbjct: 155 LSLLNKGRKEILSGRSSSMNSFNLDDVGVAEESLPPLAVFRGEMKRCCESLHIALENYLT 214

Query: 488 SFHETDGSILGNMEKENHIC 547
              E  G +   ++K  ++C
Sbjct: 215 PDDERSGIVWRKLQKLKNVC 234


>At5g53240.1 68418.m06618 expressed protein contains Pfam profile
           PF03478: Protein of unknown function (DUF295)
          Length = 361

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 12/52 (23%), Positives = 27/52 (51%)
 Frame = +2

Query: 281 EQKCKEHELYLKCLKDGNSKPLSTGKTWPLSDKDDDVMIIEDELPPIDAEDE 436
           E+K     +Y     D +   + +   W ++ KDD ++ ++D+L P+ +E +
Sbjct: 56  EKKVPPELVYNDIKDDDDIGTIGSSHGWVVTLKDDGILRLQDDLNPVASETD 107


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,808,212
Number of Sequences: 28952
Number of extensions: 255174
Number of successful extensions: 923
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 897
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 923
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1814318400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)