Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00222
         (700 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       23   1.8  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    23   2.4  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    23   3.2  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    22   4.2  
AY337337-2|AAP94193.1|  491|Tribolium castaneum cytochrome P450 ...    22   5.5  
AY337337-1|AAP94192.1|  505|Tribolium castaneum cytochrome P450 ...    21   7.3  
AF254755-1|AAF70496.1|  505|Tribolium castaneum cytochrome P450 ...    21   7.3  
AF251548-1|AAF70178.1|  491|Tribolium castaneum cytochrome P450 ...    21   7.3  
DQ855493-1|ABH88180.1|  127|Tribolium castaneum chemosensory pro...    21   9.7  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    21   9.7  

>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 11/34 (32%), Positives = 14/34 (41%)
 Frame = -2

Query: 207 LSSAVHIRRTPSARTVESRQRSLSSYPNRRYGSW 106
           LSS  H    PS R +    R   +Y    + SW
Sbjct: 286 LSSIRHPESNPSERVMRELGRIFRAYCRENHASW 319


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = -1

Query: 190 YSSDTKCTHSGKSSTVALFLPKSKIRILGS 101
           Y+ D  CTH      +++  P+S    +GS
Sbjct: 365 YNQDVSCTHYQNPEYISVVNPESPYPQIGS 394


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 589 LMTAALCSTARNMDLSTL*GRFRLRS 666
           L T    S  ++ D+S+   RFRLRS
Sbjct: 40  LKTTQSVSVTKDQDVSSSVNRFRLRS 65


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -3

Query: 182 GHQVHAQWKVVN 147
           GH +HAQ  VVN
Sbjct: 327 GHHIHAQHHVVN 338


>AY337337-2|AAP94193.1|  491|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 491

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -2

Query: 189 IRRTPSARTVESRQRSLSSYP 127
           I RTP    +  R+R L  YP
Sbjct: 48  IMRTPEQMFLADRERGLKYYP 68


>AY337337-1|AAP94192.1|  505|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 505

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -2

Query: 507 LTSGELDLARRRASMTCAFHLSL 439
           LTS  L    RR  +T AFH S+
Sbjct: 123 LTSTGLKWQTRRKILTPAFHFSI 145


>AF254755-1|AAF70496.1|  505|Tribolium castaneum cytochrome P450
           monooxigenase CYP4Q7 protein.
          Length = 505

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -2

Query: 507 LTSGELDLARRRASMTCAFHLSL 439
           LTS  L    RR  +T AFH S+
Sbjct: 123 LTSTGLKWQTRRKILTPAFHFSI 145


>AF251548-1|AAF70178.1|  491|Tribolium castaneum cytochrome P450
           monooxigenase CYP4Q4 protein.
          Length = 491

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -2

Query: 189 IRRTPSARTVESRQRSLSSYP 127
           I RTP    +  R+R L  YP
Sbjct: 48  IMRTPEQLFLAERERGLKYYP 68


>DQ855493-1|ABH88180.1|  127|Tribolium castaneum chemosensory
           protein 7 protein.
          Length = 127

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +3

Query: 186 EYEQLSSEALEAGRICCNKYLVKTAERI 269
           E ++   +AL +G   CN+   +TAE++
Sbjct: 61  ELKKTLPDALSSGCTKCNQKQKETAEKV 88


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 13/44 (29%), Positives = 17/44 (38%)
 Frame = +1

Query: 478 PCQVKFPGRQRSTYQRSGVSQSMNVMSLRSCVKRAASLMTAALC 609
           P   K P  +  T   S   +S N  S  SC+    S M +  C
Sbjct: 209 PTVPKIPPAEFPTTSSSSALESPNPASRSSCLGSNTSSMLSLNC 252


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,312
Number of Sequences: 336
Number of extensions: 4142
Number of successful extensions: 12
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18426585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)