Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00222
(700 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein L10|Sch... 179 4e-46
SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein L10|Sc... 178 5e-46
SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual 29 0.64
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S... 27 2.0
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz... 27 3.4
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz... 26 4.5
SPBC1348.02 |||S. pombe specific 5Tm protein family|Schizosaccha... 26 6.0
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 6.0
SPBPB2B2.19c |||S. pombe specific 5Tm protein family|Schizosacch... 26 6.0
SPAC977.01 |||S. pombe specific 5Tm protein family|Schizosacchar... 26 6.0
SPAC750.05c |||S. pombe specific 5Tm protein family|Schizosaccha... 26 6.0
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 25 7.9
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|... 25 7.9
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 25 7.9
SPCC24B10.07 |gad8||serine/threonine protein kinase Gad8 |Schizo... 25 7.9
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|... 25 7.9
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 25 7.9
>SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 221
Score = 179 bits (435), Expect = 4e-46
Identities = 101/215 (46%), Positives = 127/215 (59%), Gaps = 10/215 (4%)
Frame = +3
Query: 21 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 200
M RRPARCYRYCKNKPYPKSR+ R VPD KIRIFDLG+KRA VD+FPLC+HLVS+EYEQ+
Sbjct: 1 MARRPARCYRYCKNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQI 60
Query: 201 SSEALEAGRICCNKYLVKTAERIS---SISA*DFTLSTLSASIKCYHALEL-------IG 350
+SEALEA RIC NKYLVK + S + A F + ++ + C A L G
Sbjct: 61 TSEALEAARICANKYLVKIGGKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFG 120
Query: 351 SRLGCVVRLASLRVL*HVFALDSPSCPCALVTGGRHRSSRLCAVPSQVPRTSKIYVSKKW 530
G V R+ +VL V DS + R C + P +I VSKKW
Sbjct: 121 KPNGLVARVNIGQVLMSVRTKDSSRATAI-------EALRRCQY--KFPGQQRIIVSKKW 171
Query: 531 GFTKYERDEFEKLREEGRLANDGCIVQYRPEHGPL 635
GF++Y RDE+ + R G + DGC ++ + G L
Sbjct: 172 GFSQYARDEYIEKRSRGEIIPDGCYAKFLNKRGSL 206
>SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 221
Score = 178 bits (434), Expect = 5e-46
Identities = 100/215 (46%), Positives = 127/215 (59%), Gaps = 10/215 (4%)
Frame = +3
Query: 21 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 200
M RRPARCYRYCKNKPYPKSR+ R VPD KIRIFDLG+KRA VD+FPLC+HLVS+EYEQ+
Sbjct: 1 MARRPARCYRYCKNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQI 60
Query: 201 SSEALEAGRICCNKYLVKTAERIS---SISA*DFTLSTLSASIKCYHALEL-------IG 350
+SEALEA RIC NKYLVK + S + A F + ++ + C A L G
Sbjct: 61 TSEALEAARICANKYLVKIGGKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFG 120
Query: 351 SRLGCVVRLASLRVL*HVFALDSPSCPCALVTGGRHRSSRLCAVPSQVPRTSKIYVSKKW 530
G V R+ ++L V DS + R C + P +I VSKKW
Sbjct: 121 KPNGLVARVNIGQILMSVRTKDSSRATAI-------EALRRCQY--KFPGQQRIIVSKKW 171
Query: 531 GFTKYERDEFEKLREEGRLANDGCIVQYRPEHGPL 635
GF++Y RDE+ + R G + DGC ++ + G L
Sbjct: 172 GFSQYARDEYIEKRSRGEIIPDGCYAKFLNKRGSL 206
>SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 405
Score = 29.1 bits (62), Expect = 0.64
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +3
Query: 45 YRYCKNKPYPKSRFCRGVPDP-KIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEA 221
Y+ N ++FC V + KI + +KRA +D LC+ +S + E ++ +LE+
Sbjct: 34 YQKVPNSHKEFTKFCYEVYNEIKISDKEFKEKRAALDTLRLCLKRISPDAELVAFGSLES 93
Query: 222 G 224
G
Sbjct: 94 G 94
>SPCC1827.04 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 600
Score = 27.5 bits (58), Expect = 2.0
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +3
Query: 102 DPKIRIFDLGKKRATVDDFPLCV-HLVSDEYEQLSSEALEA 221
DPK+R+F KRAT + C LV+ + + S +++A
Sbjct: 320 DPKLRVFPFTTKRATHSELLRCYKELVTPKISHVDSISIKA 360
>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1273
Score = 26.6 bits (56), Expect = 3.4
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +3
Query: 228 ICCNKYLVKTAERISSISA*DFTL 299
ICC KY V T R + I FTL
Sbjct: 9 ICCAKYFVNTKSRFNEILPPRFTL 32
>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 26.2 bits (55), Expect = 4.5
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +1
Query: 136 RERPLTTFHCACTWCPTNMNS 198
R RP +T H +CT+C + S
Sbjct: 459 RSRPDSTSHASCTYCVARLRS 479
>SPBC1348.02 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 25.8 bits (54), Expect = 6.0
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -3
Query: 590 SEAALFTQLLKLITFILCETPLL*YV 513
S+A F ++L FI C +P+L Y+
Sbjct: 263 SKARFFRRMLNAFIFIFCASPMLHYL 288
>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1038
Score = 25.8 bits (54), Expect = 6.0
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -1
Query: 394 STLRLAKRTTHPSLEPISSS 335
+T +LAKR T PSL P S+
Sbjct: 957 TTTKLAKRITQPSLSPARST 976
>SPBPB2B2.19c |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 25.8 bits (54), Expect = 6.0
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -3
Query: 590 SEAALFTQLLKLITFILCETPLL*YV 513
S+A F ++L FI C +P+L Y+
Sbjct: 263 SKARFFRRMLNAFIFIFCASPMLHYL 288
>SPAC977.01 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1||Partial|Manual
Length = 316
Score = 25.8 bits (54), Expect = 6.0
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -3
Query: 590 SEAALFTQLLKLITFILCETPLL*YV 513
S+A F ++L FI C +P+L Y+
Sbjct: 235 SKARFFRRMLNAFIFIFCASPMLHYL 260
>SPAC750.05c |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 344
Score = 25.8 bits (54), Expect = 6.0
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -3
Query: 590 SEAALFTQLLKLITFILCETPLL*YV 513
S+A F ++L FI C +P+L Y+
Sbjct: 263 SKARFFRRMLNAFIFIFCASPMLHYL 288
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2685
Score = 25.4 bits (53), Expect = 7.9
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = -3
Query: 134 LTQIEDTDLGIRYTPTEPRFRIRFIFAVPVASCWPAPH 21
L Q++++ L + T T P +R V SC+P H
Sbjct: 408 LHQLQNSILRVNSTLTSPSLDLRLELLHDVLSCFPKKH 445
>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1234
Score = 25.4 bits (53), Expect = 7.9
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = -3
Query: 221 CLQSL*AQLFIFVGHQVHAQWKVVNGRSLLTQIEDTDLG 105
CL L L + H++ ++W+ +N R LL + + + G
Sbjct: 940 CLLPLLPALLSELDHKLVSEWRRINDRGLLVEEDAEETG 978
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 25.4 bits (53), Expect = 7.9
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +2
Query: 263 KDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMR 367
+D H+RM ++ FH IN MLS + D + MR
Sbjct: 859 EDNSHLRMSINSFH---INDMLSKSSRDNNRQLMR 890
>SPCC24B10.07 |gad8||serine/threonine protein kinase Gad8
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 569
Score = 25.4 bits (53), Expect = 7.9
Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 8/75 (10%)
Frame = -2
Query: 237 CSRYVLPP-KP-LSSAVHIRRTPSARTVESRQRS------LSSYPNRRYGSWDQVHPDRT 82
C++ + PP KP + SA+ S T E S LS +R+ +W P
Sbjct: 494 CAKKIQPPFKPSVESAIDTSNFDSEFTSEIPMDSVVADSHLSETVQQRFANWSYQRPTTI 553
Query: 81 SISDTVYFCSTGSIL 37
SD + + GS++
Sbjct: 554 DTSDDINTIAPGSVI 568
>SPAC3A12.05c |taf2||TATA-binding protein associated factor
Taf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1174
Score = 25.4 bits (53), Expect = 7.9
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = +1
Query: 88 VGVYLIPRSVSSIWV 132
+GVYLIP++ S +W+
Sbjct: 394 IGVYLIPKAWSDLWL 408
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 25.4 bits (53), Expect = 7.9
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 123 DLGKKRATVDDFPLCVHLVSDEYEQL 200
++ KKRA DD + +VS EYE L
Sbjct: 1033 EIEKKRAENDDLQSKLSVVSSEYENL 1058
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,131,161
Number of Sequences: 5004
Number of extensions: 67603
Number of successful extensions: 230
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 224
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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