Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00222
(700 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0740 + 6243517-6243526,6244822-6245323,6245415-6245496,624... 169 2e-42
03_02_0897 - 12239375-12239458,12240035-12240116,12240213-122407... 160 8e-40
05_01_0490 + 4083768-4083775,4083845-4084336,4084441-4084522,408... 144 6e-35
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287... 31 1.2
09_06_0320 - 22297579-22297760,22298433-22299358,22299422-222997... 30 1.5
05_01_0508 + 4242705-4242886,4243129-4243234,4246179-4246517 29 2.7
10_08_0141 + 15159160-15159306,15159708-15159815,15159958-151600... 29 3.5
06_03_0975 - 26471438-26472109,26472189-26472284,26472372-264724... 29 3.5
07_03_0011 + 12370624-12370684,12372573-12372718,12372793-123731... 28 8.2
>11_01_0740 +
6243517-6243526,6244822-6245323,6245415-6245496,
6245741-6245821
Length = 224
Score = 169 bits (411), Expect = 2e-42
Identities = 93/209 (44%), Positives = 119/209 (56%), Gaps = 4/209 (1%)
Frame = +3
Query: 21 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 200
MGRRPARCYR KNKPYPKSR+CRGVPDPKIRI+D+G K+ VD+FP CVHLVS E E +
Sbjct: 1 MGRRPARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFPYCVHLVSWEKENV 60
Query: 201 SSEALEAGRICCNKYLVKTAERIS---SISA*DFTLSTLSASIKCYHALELIGSRLGCVV 371
SSEALEA RI CNKY+ K A + + + F + ++ + C A L G
Sbjct: 61 SSEALEAARIACNKYMTKNAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120
Query: 372 RLASLRVL*HV-FALDSPSCPCALVTGGRHRSSRLCAVPSQVPRTSKIYVSKKWGFTKYE 548
+ + L S C + +H L + P KI S+KWGFTK+
Sbjct: 121 KPQGTCARVDIGQVLLSVRCK---ESNAKHAEEALRRAKFKFPGRQKIIHSRKWGFTKFT 177
Query: 549 RDEFEKLREEGRLANDGCIVQYRPEHGPL 635
R+E+ KL+ EGR+ +DG Q HG L
Sbjct: 178 REEYVKLKAEGRIMSDGVNAQLLGSHGRL 206
Score = 125 bits (301), Expect = 4e-29
Identities = 62/98 (63%), Positives = 73/98 (74%), Gaps = 1/98 (1%)
Frame = +2
Query: 251 KDCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMS 430
K+ GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQ ++S
Sbjct: 78 KNAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLS 137
Query: 431 VRSSDRWKAQVIEALRRAKSSSPD-VKDLRIKEVGFHK 541
VR + EALRRAK P K + ++ GF K
Sbjct: 138 VRCKESNAKHAEEALRRAKFKFPGRQKIIHSRKWGFTK 175
>03_02_0897 -
12239375-12239458,12240035-12240116,12240213-12240714,
12241150-12241303,12241458-12241629,12242237-12242443,
12242926-12243323
Length = 532
Score = 160 bits (389), Expect = 8e-40
Identities = 89/209 (42%), Positives = 117/209 (55%), Gaps = 10/209 (4%)
Frame = +3
Query: 33 PARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEA 212
P RCYR KNKPYPKSR+CRGVPDPKIRIFD+G+K+ + DDFPLCVHLVS E E +SSEA
Sbjct: 312 PVRCYRQIKNKPYPKSRYCRGVPDPKIRIFDVGQKKRSADDFPLCVHLVSWEKENVSSEA 371
Query: 213 LEAGRICCNKYLVKTAERIS---SISA*DFTLSTLSASIKCYHALEL-------IGSRLG 362
LEA RI CNKY+ K A + + + A + + ++ + C A L G G
Sbjct: 372 LEAARIACNKYMAKHAGKDAFHLRVCAHPYHVLRINKMLSCAGADRLQTGMRGAFGKPTG 431
Query: 363 CVVRLASLRVL*HVFALDSPSCPCALVTGGRHRSSRLCAVPSQVPRTSKIYVSKKWGFTK 542
R+ +VL V D+ H L + P ++ S KWGFT+
Sbjct: 432 TCARVRIGQVLLSVRCRDA---------NAAHAQEALRRAKFKFPGRQRVIFSAKWGFTR 482
Query: 543 YERDEFEKLREEGRLANDGCIVQYRPEHG 629
++RDE+ KL+ EGR+ DG + HG
Sbjct: 483 FKRDEYLKLKSEGRIVPDGVNAKLLTRHG 511
Score = 121 bits (292), Expect = 5e-28
Identities = 58/83 (69%), Positives = 64/83 (77%)
Frame = +2
Query: 251 KDCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMS 430
K GKD FH+R+ HP+HV+RINKMLSCAGADRLQTGMRGAFGKP GT ARVRIGQ ++S
Sbjct: 385 KHAGKDAFHLRVCAHPYHVLRINKMLSCAGADRLQTGMRGAFGKPTGTCARVRIGQVLLS 444
Query: 431 VRSSDRWKAQVIEALRRAKSSSP 499
VR D A EALRRAK P
Sbjct: 445 VRCRDANAAHAQEALRRAKFKFP 467
>05_01_0490 +
4083768-4083775,4083845-4084336,4084441-4084522,
4086671-4087357,4087555-4087813,4088435-4088558,
4089474-4089564
Length = 580
Score = 144 bits (349), Expect = 6e-35
Identities = 81/190 (42%), Positives = 106/190 (55%), Gaps = 4/190 (2%)
Frame = +3
Query: 42 CYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEA 221
CYR KNKPYPKSR+CRGVPDPKIRI+D+G K+ VD+F CVHLVS E E ++SEALEA
Sbjct: 4 CYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFSHCVHLVSWEKENVTSEALEA 63
Query: 222 GRICCNKYLVKTAERIS---SISA*DFTLSTLSASIKCYHALELIGSRLGCVVRLASLRV 392
RI CNKY+ K+A + + + F + ++ + C A L G +
Sbjct: 64 ARIACNKYMTKSAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCA 123
Query: 393 L*HV-FALDSPSCPCALVTGGRHRSSRLCAVPSQVPRTSKIYVSKKWGFTKYERDEFEKL 569
+ L S C H S L + P KI S+KWGFTK+ RDE+ +L
Sbjct: 124 RVDIGQVLLSVRCK---PNNAVHASEALRRAKFKFPGRQKIIESRKWGFTKFSRDEYVRL 180
Query: 570 REEGRLANDG 599
+ EGR+ DG
Sbjct: 181 KSEGRIMPDG 190
Score = 124 bits (300), Expect = 5e-29
Identities = 62/98 (63%), Positives = 71/98 (72%), Gaps = 1/98 (1%)
Frame = +2
Query: 251 KDCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMS 430
K GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQ ++S
Sbjct: 74 KSAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLS 133
Query: 431 VRSSDRWKAQVIEALRRAKSSSPD-VKDLRIKEVGFHK 541
VR EALRRAK P K + ++ GF K
Sbjct: 134 VRCKPNNAVHASEALRRAKFKFPGRQKIIESRKWGFTK 171
>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
2879715-2879973,2880060-2880346,2880423-2880758,
2880862-2881003,2881077-2881297,2881379-2881540,
2881617-2881775,2881860-2882159,2882834-2883097,
2883133-2883243,2883902-2883988
Length = 1871
Score = 30.7 bits (66), Expect = 1.2
Identities = 10/31 (32%), Positives = 21/31 (67%)
Frame = -2
Query: 423 MGCPMRTRATVP*GLPNAPRIPVWSLSAPAH 331
+ CP+ + + VP LP++P P++S ++P +
Sbjct: 1625 LSCPLTSPSYVPTSLPHSPTSPIYSATSPIY 1655
>09_06_0320 - 22297579-22297760,22298433-22299358,22299422-22299747,
22300591-22300660,22301632-22301726,22301917-22302048,
22302154-22302222,22302953-22303051,22303169-22303253,
22303353-22303453,22303660-22303728,22303861-22303901,
22304085-22304303,22304444-22304470,22304562-22304660,
22304898-22305106,22305382-22305485,22305753-22305894,
22305991-22306289,22306508-22306903
Length = 1229
Score = 30.3 bits (65), Expect = 1.5
Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Frame = +2
Query: 377 GKPQGTVARVRIGQPIMSVRSSD--RWKAQVIEALRRAKSSSPDVKDLRIKEV 529
G PQ T+ R+ +G P +S++S+D A+V + A + D+K+ R+K+V
Sbjct: 1089 GTPQQTLERLHVGHPTLSLQSNDIVCLMAKVDQWDDHAWVLAVDMKNRRLKDV 1141
>05_01_0508 + 4242705-4242886,4243129-4243234,4246179-4246517
Length = 208
Score = 29.5 bits (63), Expect = 2.7
Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Frame = -1
Query: 316 DADNVERVKSHADMELILSAVFTRYLLQQIR-----PASKASELSCSYSSDTKCTHSGKS 152
+ DN+ V AD L+++A +++Q + PA+ A+ C+ S TK H G+
Sbjct: 143 NCDNLPVVPLGADQPLVMAACKRAAVIKQQQQASSSPATAAAAAQCAVPSSTKAIHVGEE 202
Query: 151 STVA 140
+ ++
Sbjct: 203 AHIS 206
>10_08_0141 +
15159160-15159306,15159708-15159815,15159958-15160006,
15160067-15160182,15160358-15160399,15161026-15161442,
15162356-15162509,15162911-15162975,15163793-15163870,
15163951-15164061,15164227-15164271,15164677-15164850,
15165383-15166335,15166471-15166681,15167037-15167196,
15168786-15169174
Length = 1072
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +3
Query: 144 TVDDFPLC-VHLVSDEYEQLSSEALEAGRICCNKYLVK 254
T D P C +HL SD Y S E ++AG+ C L K
Sbjct: 587 TTDWNPRCDIHLKSDGYTNYSLETVQAGKQQCKAALQK 624
>06_03_0975 -
26471438-26472109,26472189-26472284,26472372-26472482,
26472494-26472530,26472566-26472576,26472674-26473050,
26474310-26474895
Length = 629
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -2
Query: 531 PTSLIRRSLTSGELDLARRRASMTCAFHLSLE 436
PT L+ L L+L RR A++ CA+ L+ E
Sbjct: 72 PTVLVTEKLGDAGLELLRRFANVDCAYELTAE 103
>07_03_0011 +
12370624-12370684,12372573-12372718,12372793-12373129,
12374323-12374452,12375346-12375406,12375572-12375618,
12376873-12376950,12377195-12377345,12377495-12377558,
12377735-12377893,12378007-12378128,12378952-12378981,
12379050-12379124,12379563-12379644,12379809-12379938,
12381417-12382164,12382833-12383054,12383127-12383276,
12384851-12384904,12384985-12385058,12386130-12386204,
12386365-12386584
Length = 1071
Score = 27.9 bits (59), Expect = 8.2
Identities = 17/57 (29%), Positives = 25/57 (43%)
Frame = +1
Query: 13 RSPWGAGQQDATGTAKINRIRNRGSVGVYLIPRSVSSIWVRRERPLTTFHCACTWCP 183
R+ A Q +TGT K + R G + L + V ++ P+ F AC W P
Sbjct: 199 RASKSAWSQSSTGTRKWMQYRPAGETSLTLPCQGVLNLIATGPTPMDVF--ACAWSP 253
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,966,402
Number of Sequences: 37544
Number of extensions: 515835
Number of successful extensions: 1417
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1355
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1417
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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