Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00222
         (700 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g14320.1 68414.m01697 60S ribosomal protein L10 (RPL10A) / Wi...   180   1e-45
At1g26910.1 68414.m03281 60S ribosomal protein L10 (RPL10B) Near...   178   2e-45
At1g66580.1 68414.m07565 60S ribosomal protein L10 (RPL10C) cont...   176   1e-44
At5g48310.1 68418.m05968 expressed protein                             31   0.97 
At5g47870.1 68418.m05914 expressed protein                             29   2.2  
At3g19480.1 68416.m02469 D-3-phosphoglycerate dehydrogenase, put...    29   2.2  
At5g24280.1 68418.m02856 expressed protein ; expression supporte...    28   5.2  
At4g24120.1 68417.m03462 transporter, putative similar to iron-p...    28   5.2  

>At1g14320.1 68414.m01697 60S ribosomal protein L10 (RPL10A) /
           Wilm's tumor suppressor protein-related similar to tumor
           suppressor GI:575354 from [Oryza sativa]
          Length = 220

 Score =  180 bits (437), Expect = 1e-45
 Identities = 102/215 (47%), Positives = 126/215 (58%), Gaps = 10/215 (4%)
 Frame = +3

Query: 21  MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 200
           MGRRPARCYR  K KPYPKSR+CRGVPDPKIRI+D+G KR  VD+FP CVHLVS E E +
Sbjct: 1   MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV 60

Query: 201 SSEALEAGRICCNKYLVKTAERIS---SISA*DFTLSTLSASIKCYHALEL-------IG 350
           SSEALEA RI CNKY+VK+A + +    I    F +  ++  + C  A  L        G
Sbjct: 61  SSEALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120

Query: 351 SRLGCVVRLASLRVL*HVFALDSPSCPCALVTGGRHRSSRLCAVPSQVPRTSKIYVSKKW 530
             LG   R+A  +VL  V   D+          G H    L     + P   KI VS+KW
Sbjct: 121 KALGTCARVAIGQVLLSVRCKDA---------HGHHAQEALRRAKFKFPGRQKIIVSRKW 171

Query: 531 GFTKYERDEFEKLREEGRLANDGCIVQYRPEHGPL 635
           GFTK+ R +F KLR+E R+  DG   ++   HGPL
Sbjct: 172 GFTKFNRADFTKLRQEKRVVPDGVNAKFLSCHGPL 206


>At1g26910.1 68414.m03281 60S ribosomal protein L10 (RPL10B) Nearly
           identical to ribosomal protein L10.e, Wilm's tumor
           suppressor homologue, gi|17682 (Z15157), however
           differences in sequence indicate this is a different
           member of the L10 family
          Length = 221

 Score =  178 bits (434), Expect = 2e-45
 Identities = 101/215 (46%), Positives = 126/215 (58%), Gaps = 10/215 (4%)
 Frame = +3

Query: 21  MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 200
           MGRRPARCYR  K KPYPKSR+CRGVPDPKIRI+D+G KR  VD+FP CVHLVS E E +
Sbjct: 1   MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPYCVHLVSWEKENV 60

Query: 201 SSEALEAGRICCNKYLVKTAERIS---SISA*DFTLSTLSASIKCYHALEL-------IG 350
           SSEALEA RI CNKY+VK+A + +    I    F +  ++  + C  A  L        G
Sbjct: 61  SSEALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120

Query: 351 SRLGCVVRLASLRVL*HVFALDSPSCPCALVTGGRHRSSRLCAVPSQVPRTSKIYVSKKW 530
             LG   R+A  +VL  V   D+          G H    L     + P   KI VS+KW
Sbjct: 121 KALGTCARVAIGQVLLSVRCKDA---------HGHHAQEALRRAKFKFPGRQKIIVSRKW 171

Query: 531 GFTKYERDEFEKLREEGRLANDGCIVQYRPEHGPL 635
           GFTK+ R ++ KLR+E R+  DG   ++   HGPL
Sbjct: 172 GFTKFNRADYTKLRQEKRIVPDGVNAKFLSCHGPL 206


>At1g66580.1 68414.m07565 60S ribosomal protein L10 (RPL10C)
           contains Pfam profile: PF00826: Ribosomal L10
          Length = 221

 Score =  176 bits (429), Expect = 1e-44
 Identities = 101/215 (46%), Positives = 124/215 (57%), Gaps = 10/215 (4%)
 Frame = +3

Query: 21  MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 200
           MGRRPARCYR  K KPYPKSR+CRGVPDPKIRI+D+G KR  VD+FP CVHLVS E E +
Sbjct: 1   MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV 60

Query: 201 SSEALEAGRICCNKYLVKTAERIS---SISA*DFTLSTLSASIKCYHALEL-------IG 350
           SSEALEA RI CNKY+VK+A + +    I    F +  ++  + C  A  L        G
Sbjct: 61  SSEALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120

Query: 351 SRLGCVVRLASLRVL*HVFALDSPSCPCALVTGGRHRSSRLCAVPSQVPRTSKIYVSKKW 530
             LG   R+A  +VL  V   D+          G H    L     + P   KI VS+KW
Sbjct: 121 KALGTCARVAIGQVLLSVRCKDN---------HGVHAQEALRRAKFKFPGRQKIIVSRKW 171

Query: 531 GFTKYERDEFEKLREEGRLANDGCIVQYRPEHGPL 635
           GFTK+ R E+ KLR   R+  DG   ++   HGPL
Sbjct: 172 GFTKFNRAEYTKLRAMKRIVPDGVNAKFLSNHGPL 206


>At5g48310.1 68418.m05968 expressed protein
          Length = 1156

 Score = 30.7 bits (66), Expect = 0.97
 Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
 Frame = -3

Query: 197 LFIFVGHQVHAQWKVVNGRSLLTQIEDTDLGIRYTPTEPRFRIR-FIFAVPVASCWPAPH 21
           LF+ + +++ A  K+ N   L + I+  +L      T+   R+R F+ AVP  SC P PH
Sbjct: 736 LFLIISNEIEADIKITNEHVLPSSIDLANLAAVVYSTQLCHRLRAFLSAVP-PSC-PLPH 793


>At5g47870.1 68418.m05914 expressed protein
          Length = 199

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 20/74 (27%), Positives = 30/74 (40%)
 Frame = +2

Query: 281 RMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQ 460
           R++L PF  + +N+ + C+G      G+ G     +  V       PI    SS      
Sbjct: 23  RIKLSPFRTVAVNRGVRCSGG-----GVGGGDAGKKKAVPNSNYVVPIDKFSSSSSITRP 77

Query: 461 VIEALRRAKSSSPD 502
           +IE LR      PD
Sbjct: 78  LIEILRDLNKKIPD 91


>At3g19480.1 68416.m02469 D-3-phosphoglycerate dehydrogenase,
           putative / 3-PGDH, putative similar to SP:O04130 from
           [Arabidopsis thaliana]
          Length = 588

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -2

Query: 531 PTSLIRRSLTSGELDLARRRASMTCAFHLSLE 436
           PT L+   L    +DL ++ A++ C++ LSLE
Sbjct: 47  PTILVTEKLGQAGIDLLKKYANVDCSYDLSLE 78


>At5g24280.1 68418.m02856 expressed protein ; expression supported by
            MPSS
          Length = 1634

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +3

Query: 180  SDEYEQLSSEALEAGRICCNKYLV 251
            SDEY +  SEA   GR   N++LV
Sbjct: 1431 SDEYRKFQSEAASLGRSITNRFLV 1454


>At4g24120.1 68417.m03462 transporter, putative similar to
           iron-phytosiderophore transporter protein yellow stripe
           1 [Zea mays] GI:10770865; contains Pfam profile PF03169:
           OPT oligopeptide transporter protein
          Length = 665

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = +3

Query: 246 LVKTAERISSISA*DF-TLSTLSASIKCYHALELIGSRLGCVVRLASLRVL*HVFALDSP 422
           L+K+   +S I   DF T      S K   A ++IG+ +GC+V   S  +    F + +P
Sbjct: 468 LIKSVVSVSCILMQDFKTAHYTMTSPKAMFASQMIGTVVGCIVTPLSFFLFYKAFDIGNP 527

Query: 423 S 425
           +
Sbjct: 528 N 528


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,838,657
Number of Sequences: 28952
Number of extensions: 379545
Number of successful extensions: 1082
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1043
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1076
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)