Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00220
         (801 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    29   0.77 
SPAC22F8.02c |pvg5|mug50|PvGal biosynthesis protein Pvg5|Schizos...    28   1.3  
SPBC651.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    28   1.3  
SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3 |Schi...    27   4.1  
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo...    27   4.1  
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo...    26   7.2  

>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1888

 Score = 29.1 bits (62), Expect = 0.77
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = +1

Query: 403  SNL*IDFIAFNNSSQASKWFTIISCLHDTCTTIL*IVYFGE 525
            SNL    + F+N + +SKW   IS L   C   L + Y GE
Sbjct: 1612 SNLLRLAMGFHNQNSSSKWDVEISSLRKFCVKELLLSYLGE 1652


>SPAC22F8.02c |pvg5|mug50|PvGal biosynthesis protein
           Pvg5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 372

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 16/47 (34%), Positives = 28/47 (59%)
 Frame = -1

Query: 429 CNKIYL*IGLNITIQKTLVFYSHYMNIQKLPKTESEHPTFHMVLSAL 289
           C +++L  G  I + + L+FYS+      + K ++E+P +H  LSAL
Sbjct: 17  CLRLFL-FGSLILLLRPLIFYSN----TTMKKLKTEYPIYHRHLSAL 58


>SPBC651.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 237

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 6/55 (10%)
 Frame = -1

Query: 384 KTLVFYSHYMNIQKLPKTESEHPTFHMV------LSALLLMYI*KPEARMRAALA 238
           K++VF + Y +I K PK   E   FH +      + ++ L ++  PE RM  A+A
Sbjct: 26  KSIVFRTQYESIFKNPKHHGEKKPFHCLFKLAGTMKSISLSHLDIPEHRMSNAVA 80


>SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 970

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +3

Query: 462 HHYLMPS*YLYYHSVNCL 515
           HHYL+P   ++YH ++ L
Sbjct: 82  HHYLIPDSNIFYHCIDAL 99


>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
           SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1000

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -2

Query: 137 RASAPKGGRAALPAAPEIIQNQTRWGERRSPLSVNNAI 24
           R  A + GR AL  +  + +N TR+    +P+SV ++I
Sbjct: 104 RRPAGRRGRPALNTSNSLERNGTRYVSAEAPISVKSSI 141


>SPBC31F10.10c |||zf-MYND type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 14/52 (26%), Positives = 24/52 (46%)
 Frame = +2

Query: 146 MTSSEVSAGWSHSASSLICSTSYGTHTLSHWARAALIRASGFYIYIRSRADK 301
           M  S VS  W++ AS  I +  Y    L   +  +L+ +    +Y+ S + K
Sbjct: 1   MRESNVSIVWNNKASVTINTVLYDRRALDCDSEMSLMNSLSHLVYLTSTSPK 52


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,624,918
Number of Sequences: 5004
Number of extensions: 79611
Number of successful extensions: 188
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)