Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00220
         (801 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0581 + 10890635-10890725,10891051-10891140,10892585-108928...    29   4.3  
10_05_0012 + 7874326-7874831,7929715-7931393,7931508-7933396           28   9.9  
02_02_0537 + 11308195-11309667                                         28   9.9  
01_05_0645 - 23899579-23904483                                         28   9.9  

>09_02_0581 +
           10890635-10890725,10891051-10891140,10892585-10892857,
           10893037-10893054,10893458-10893526,10893991-10894042,
           10894706-10895093
          Length = 326

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 19/55 (34%), Positives = 29/55 (52%)
 Frame = +2

Query: 140 QLMTSSEVSAGWSHSASSLICSTSYGTHTLSHWARAALIRASGFYIYIRSRADKT 304
           +L  S EVS+ W    ++L+C+T  GT   +  A  AL++ S       +RAD T
Sbjct: 249 RLRGSYEVSSMWKVVDTALLCTTDIGTQRPTMAAVVALLKES--LALEETRADST 301


>10_05_0012 + 7874326-7874831,7929715-7931393,7931508-7933396
          Length = 1357

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +1

Query: 592  ILHRHPNGLPTLQ*RLTQPVLNCLFCCYRNT 684
            ILH HPN         TQP   C  C Y+++
Sbjct: 1015 ILHNHPNSFLPQYILRTQPKAPCRSCAYKDS 1045


>02_02_0537 + 11308195-11309667
          Length = 490

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +1

Query: 592 ILHRHPNGLPTLQ*RLTQPVLNCLFCCYRNT 684
           ILH HPN         TQP   C  C Y+++
Sbjct: 173 ILHNHPNSFLPQYILRTQPKAPCRSCAYKDS 203


>01_05_0645 - 23899579-23904483
          Length = 1634

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +1

Query: 592  ILHRHPNGLPTLQ*RLTQPVLNCLFCCYRNT 684
            ILH HPN         TQP   C  C Y+++
Sbjct: 1292 ILHNHPNSFLPQYILRTQPKAPCRSCAYKDS 1322


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,722,638
Number of Sequences: 37544
Number of extensions: 491188
Number of successful extensions: 1215
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1215
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)