Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00220
         (801 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3702| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.3  
SB_23845| Best HMM Match : IL6 (HMM E-Value=1.2)                       29   4.4  
SB_43872| Best HMM Match : DUF229 (HMM E-Value=0)                      29   5.8  
SB_25773| Best HMM Match : 7tm_1 (HMM E-Value=1.68156e-44)             28   7.7  

>SB_3702| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 302

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = +2

Query: 89  PALREEQPFRLWVLKHGQLMTSSEVSAGWSHSASSLICSTSYGTHTLSH 235
           PA+  +QP+          +  S+ +  W+ S ++ IC+  YG H + H
Sbjct: 48  PAVYSQQPYYGPPTTQQTFVQVSKAAILWTTSNTTNICTGQYGNHNMDH 96


>SB_23845| Best HMM Match : IL6 (HMM E-Value=1.2)
          Length = 1388

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 13/48 (27%), Positives = 27/48 (56%)
 Frame = +2

Query: 152 SSEVSAGWSHSASSLICSTSYGTHTLSHWARAALIRASGFYIYIRSRA 295
           +S+ +   + SASS +C +SYG+  L  + +  +++   F   +R +A
Sbjct: 361 TSDDTIATNRSASSNVCQSSYGSEKLCDYLQRLIVKTEHFLRRMRWKA 408


>SB_43872| Best HMM Match : DUF229 (HMM E-Value=0)
          Length = 806

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
 Frame = +2

Query: 107 QPFRLWVLKHGQL-MTSSEVSAGWSHSASSLICSTSYGTHTLSHWARAALIRASGFYIYI 283
           Q F+ W L    + +T  + +  WSH   S    + +    L+   RAA  +A  F +  
Sbjct: 623 QAFKEWTLCFEAMEITLEDQNKAWSHEQESNYLDSVHEQVQLTTTGRAARQKARSFEMAS 682

Query: 284 RSRADK 301
             RADK
Sbjct: 683 AKRADK 688


>SB_25773| Best HMM Match : 7tm_1 (HMM E-Value=1.68156e-44)
          Length = 906

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +2

Query: 179 HSASSLICSTSYGTHTLSHWARAALIRASGFYIY 280
           H   +L+C  +Y T T+ +WA   +      YIY
Sbjct: 441 HVIYALVCGFAYVTFTVIYWAAGGVNHEGNSYIY 474


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,364,433
Number of Sequences: 59808
Number of extensions: 561605
Number of successful extensions: 1433
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1427
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2215746665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)