Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00220
(801 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41010-5|AAV28334.1| 975|Caenorhabditis elegans Hypothetical pr... 30 2.2
U41010-4|AAV28333.1| 1622|Caenorhabditis elegans Hypothetical pr... 30 2.2
AC006708-12|AAT81173.1| 908|Caenorhabditis elegans Hypothetical... 29 3.9
AC006708-11|AAF60426.2| 1019|Caenorhabditis elegans Hypothetical... 29 3.9
AC024788-3|AAF60614.2| 98|Caenorhabditis elegans Caenacin (cae... 29 5.1
Z99281-14|CAB16524.1| 532|Caenorhabditis elegans Hypothetical p... 28 6.8
Z79756-6|CAB02117.3| 693|Caenorhabditis elegans Hypothetical pr... 28 8.9
U23486-8|AAC46779.3| 1025|Caenorhabditis elegans Nmda class glut... 28 8.9
AF318613-1|AAK01101.2| 1025|Caenorhabditis elegans NMDA-type ion... 28 8.9
AF036702-10|AAU05573.1| 164|Caenorhabditis elegans Hypothetical... 28 8.9
>U41010-5|AAV28334.1| 975|Caenorhabditis elegans Hypothetical protein
T05A12.4b protein.
Length = 975
Score = 29.9 bits (64), Expect = 2.2
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = -1
Query: 270 KPEARMRAALAQCDRVWVPYEVEQMRLDAECDQPAETSELVMS*PCFSTQ 121
K E R + + + P + ++ RLD E + ET+E + PC STQ
Sbjct: 854 KSERNGRVNEREIEEITRPKDAKRSRLDVEEEDEMETNEEKSNTPCSSTQ 903
>U41010-4|AAV28333.1| 1622|Caenorhabditis elegans Hypothetical protein
T05A12.4a protein.
Length = 1622
Score = 29.9 bits (64), Expect = 2.2
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = -1
Query: 270 KPEARMRAALAQCDRVWVPYEVEQMRLDAECDQPAETSELVMS*PCFSTQ 121
K E R + + + P + ++ RLD E + ET+E + PC STQ
Sbjct: 854 KSERNGRVNEREIEEITRPKDAKRSRLDVEEEDEMETNEEKSNTPCSSTQ 903
>AC006708-12|AAT81173.1| 908|Caenorhabditis elegans Hypothetical
protein Y110A7A.9b protein.
Length = 908
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +3
Query: 495 YHSVNCLFWRIKQGILILLY*SNL*RDFIAFNNS 596
Y S FW++ G L LLY S+ D + FN++
Sbjct: 217 YQSGKLAFWQLSNGRLPLLYRSSFIEDVLEFNDN 250
>AC006708-11|AAF60426.2| 1019|Caenorhabditis elegans Hypothetical
protein Y110A7A.9a protein.
Length = 1019
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +3
Query: 495 YHSVNCLFWRIKQGILILLY*SNL*RDFIAFNNS 596
Y S FW++ G L LLY S+ D + FN++
Sbjct: 328 YQSGKLAFWQLSNGRLPLLYRSSFIEDVLEFNDN 361
>AC024788-3|AAF60614.2| 98|Caenorhabditis elegans Caenacin
(caenorhabditis bacteriocin)protein 6 protein.
Length = 98
Score = 28.7 bits (61), Expect = 5.1
Identities = 18/51 (35%), Positives = 27/51 (52%)
Frame = -1
Query: 306 MVLSALLLMYI*KPEARMRAALAQCDRVWVPYEVEQMRLDAECDQPAETSE 154
++L +L P+A R LAQ ++V PY+VE LD D P + S+
Sbjct: 8 ILLFCILATVFSAPKAPERGQLAQAEQVQGPYDVE---LDGADDAPHDRSK 55
>Z99281-14|CAB16524.1| 532|Caenorhabditis elegans Hypothetical
protein Y57G11C.23 protein.
Length = 532
Score = 28.3 bits (60), Expect = 6.8
Identities = 14/59 (23%), Positives = 31/59 (52%)
Frame = +2
Query: 83 LSPALREEQPFRLWVLKHGQLMTSSEVSAGWSHSASSLICSTSYGTHTLSHWARAALIR 259
LS AL + F ++ G + + ++ GW++++ +I S + T +WA A +++
Sbjct: 150 LSAALNDVMSFYIFRFLVGFAIAGT-LTVGWTYASEMVIPSRRFRLRTFPNWANARMMQ 207
>Z79756-6|CAB02117.3| 693|Caenorhabditis elegans Hypothetical
protein F53C11.2 protein.
Length = 693
Score = 27.9 bits (59), Expect = 8.9
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +2
Query: 119 LWVLKHGQLMTSSEVSAGWSHSASSLICSTSYG 217
LWV G L+TS+ GWS S +I + YG
Sbjct: 551 LWVFTKG-LLTSNFSKVGWSFFVSWVIIANHYG 582
>U23486-8|AAC46779.3| 1025|Caenorhabditis elegans Nmda class
glutamate receptor protein1 protein.
Length = 1025
Score = 27.9 bits (59), Expect = 8.9
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +3
Query: 258 APPVFIYTLGVGQTRPCGKLDALIQFWVIF 347
A P F+YT +G C +L + W IF
Sbjct: 403 ADPPFVYTTPIGSPSQCAELGNTVVEWSIF 432
>AF318613-1|AAK01101.2| 1025|Caenorhabditis elegans NMDA-type
ionotropic glutamatereceptor NMR-1 protein.
Length = 1025
Score = 27.9 bits (59), Expect = 8.9
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +3
Query: 258 APPVFIYTLGVGQTRPCGKLDALIQFWVIF 347
A P F+YT +G C +L + W IF
Sbjct: 403 ADPPFVYTTPIGSPSQCAELGNTVVEWSIF 432
>AF036702-10|AAU05573.1| 164|Caenorhabditis elegans Hypothetical
protein F33D4.8 protein.
Length = 164
Score = 27.9 bits (59), Expect = 8.9
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -2
Query: 785 RPHYSQIMESVLSWLSWHG*NMKE*NQCDP 696
+PH+ + +S WL+WH N++E Q P
Sbjct: 47 KPHHIGVRKS---WLTWHSQNLEEFRQSQP 73
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,884,491
Number of Sequences: 27780
Number of extensions: 442250
Number of successful extensions: 1098
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1065
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1098
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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