Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00220
         (801 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g12290.1 68418.m01445 expressed protein similarity to NCA2 pr...    30   2.1  
At3g19515.1 68416.m02473 expressed protein                             28   6.3  
At2g32160.2 68415.m03931 expressed protein                             28   8.3  
At2g32160.1 68415.m03930 expressed protein                             28   8.3  
At1g43680.1 68414.m05018 hypothetical protein                          28   8.3  

>At5g12290.1 68418.m01445 expressed protein similarity to NCA2
           protein, yeast, PIR:S54389~Contains 'Homeobox' domain
           signature and profile AA305-328
          Length = 602

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 113 FRLWVLKHGQLMTSSEVSAGWSHSASSLICS 205
           F +W+L+H  LM SS++   W H A     S
Sbjct: 315 FSIWLLRHSSLMGSSDIE-NWVHDAKEATMS 344


>At3g19515.1 68416.m02473 expressed protein
          Length = 507

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 504 VNCLFWRIKQGILILLY*SNL*RDFIAF 587
           V CLFWRI++  L+ L  S   + F+ F
Sbjct: 108 VPCLFWRIRESTLLKLVTSKSWKKFLGF 135


>At2g32160.2 68415.m03931 expressed protein
          Length = 449

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = +1

Query: 418 DFI-AFNNSSQASKWFTIISCLH-DTCTTIL 504
           DF+  FN SSQA  W  +++C   DT   I+
Sbjct: 325 DFVEVFNESSQAGMWDAVVTCFFIDTAHNII 355


>At2g32160.1 68415.m03930 expressed protein
          Length = 415

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = +1

Query: 418 DFI-AFNNSSQASKWFTIISCLH-DTCTTIL 504
           DF+  FN SSQA  W  +++C   DT   I+
Sbjct: 325 DFVEVFNESSQAGMWDAVVTCFFIDTAHNII 355


>At1g43680.1 68414.m05018 hypothetical protein
          Length = 247

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = -3

Query: 421 NLFINWIKYNNTKNSRV-LFS-LHEYPKITQN*IRASNFPH 305
           N    W +  N++NS +  +S LH++P ++ N   A N PH
Sbjct: 135 NSLNRWDQEINSQNSNISTYSPLHDFPVVSWNFYTAGNLPH 175


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,574,506
Number of Sequences: 28952
Number of extensions: 402647
Number of successful extensions: 951
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 920
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 950
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1814318400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)