Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00218
         (775 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q77LZ8 Cluster: Helicase; n=5; Nucleopolyhedrovirus|Rep...    35   2.0  
UniRef50_Q7R8P2 Cluster: Histone deacetylase family, putative; n...    35   2.0  
UniRef50_UPI00006CCA41 Cluster: hypothetical protein TTHERM_0028...    35   2.6  
UniRef50_Q54U96 Cluster: Putative uncharacterized protein; n=1; ...    34   3.4  

>UniRef50_Q77LZ8 Cluster: Helicase; n=5; Nucleopolyhedrovirus|Rep:
           Helicase - Helicoverpa armigera NPV
          Length = 1253

 Score = 35.1 bits (77), Expect = 2.0
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -3

Query: 746 ITYTQQKNSFHNNYMIIYFWRKISHKRF*ICNNEI 642
           I Y  + N F+ +Y+II  W+ +S +RF  C  +I
Sbjct: 372 IRYLSESNYFNFDYLIIVVWKMVSRQRFEFCETDI 406


>UniRef50_Q7R8P2 Cluster: Histone deacetylase family, putative; n=1;
            Plasmodium yoelii yoelii|Rep: Histone deacetylase family,
            putative - Plasmodium yoelii yoelii
          Length = 2009

 Score = 35.1 bits (77), Expect = 2.0
 Identities = 20/53 (37%), Positives = 29/53 (54%)
 Frame = +2

Query: 68   THYNGQCSKKNRSNIN*VVLNCRRCNIQHNKNDLKREIHGSDTGHTPTCIVNI 226
            T+ N   S KN SN N    N    N+ +  NDLK++I+G+D   T  C+ N+
Sbjct: 1706 TYENKNHSNKNHSNNNSFENNNDYINLINKNNDLKKKIYGNDF-KTAICLRNV 1757


>UniRef50_UPI00006CCA41 Cluster: hypothetical protein
           TTHERM_00283100; n=1; Tetrahymena thermophila SB210|Rep:
           hypothetical protein TTHERM_00283100 - Tetrahymena
           thermophila SB210
          Length = 566

 Score = 34.7 bits (76), Expect = 2.6
 Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = +2

Query: 83  QCSKKNRSNIN*VVLNCRRCNIQHNKNDLKREIHGSDTGH-TPTCIVNIHTNQCI 244
           QCS  N SN N +  NCR  N  +N + +   ++   T H +P  I NI+TNQ +
Sbjct: 246 QCSN-NCSN-NCISGNCRGGNTNNNNSGISNNLNSVSTAHSSPNTINNINTNQYV 298


>UniRef50_Q54U96 Cluster: Putative uncharacterized protein; n=1;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 715

 Score = 34.3 bits (75), Expect = 3.4
 Identities = 16/39 (41%), Positives = 26/39 (66%)
 Frame = +3

Query: 456 LLLELIKIVT*EKNVTARV*LSVPFYLYPFLFCTCLCLL 572
           + L+LI I    +N+T R+ LS+P++L   LFC+ + LL
Sbjct: 425 IFLQLISISISIENITIRILLSLPWFLSILLFCSTILLL 463


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 709,525,421
Number of Sequences: 1657284
Number of extensions: 13912587
Number of successful extensions: 27834
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 26728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27819
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 65027411410
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)