Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00218
         (775 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr...    29   0.56 
SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    27   3.0  
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi...    27   3.9  
SPCC736.02 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    27   3.9  

>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 553

 Score = 29.5 bits (63), Expect = 0.56
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 611 IVYVPSILNLIFRCCKFKISYVKFC 685
           I+Y   IL+  F C KF ++ +KFC
Sbjct: 32  ILYSQEILSFFFMCSKFSMNSLKFC 56


>SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 822

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 15/36 (41%), Positives = 17/36 (47%)
 Frame = -2

Query: 198 PVSEPWISRFRSFLLCCMLHRLQFNTT*FIFDRFFL 91
           P+  PWI RFRS   CC    L F+     F  F L
Sbjct: 562 PLMSPWIQRFRS--RCCFRLGLLFSIFVVGFSSFIL 595


>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1107

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 221 LQYMSEYVLYLNHGSRASGHFYYVV 147
           +QY+ E    LN  S  + HF+Y+V
Sbjct: 111 VQYIKELYTLLNESSNNTWHFHYIV 135


>SPCC736.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 286

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -3

Query: 758 FLLSITYTQQKNSFHNNYMIIYFWRKISHKRF 663
           FL    YT ++NS     ++  FW  I  KRF
Sbjct: 211 FLTWFEYTMEQNSVELLDIVFGFWNNIIEKRF 242


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,126,306
Number of Sequences: 5004
Number of extensions: 65108
Number of successful extensions: 164
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)