Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00218
         (775 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0309 - 2233573-2234556,2234670-2234721,2235406-2236391,223...    30   1.8  

>06_01_0309 -
           2233573-2234556,2234670-2234721,2235406-2236391,
           2237790-2238050
          Length = 760

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 17/59 (28%), Positives = 27/59 (45%)
 Frame = -3

Query: 656 CNNEISNLILRVHIQSAVHNARLLRPRY*QAQTSAK*KGIEIEGDRKSHAGRNVFLLRN 480
           C N +S  + R+H+        L       AQTS   K +E+E     HA +++F  R+
Sbjct: 220 CYNTVSKKLERIHVSDVKSRTPLKDKEMEAAQTS---KNVEVEKSSSFHASKDMFESRH 275


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,106,904
Number of Sequences: 37544
Number of extensions: 344171
Number of successful extensions: 676
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 676
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)